LibreChat/package.json
Danny Avila 181d705579
🧹 fix: Clean Up Orphaned Agent File Stubs After Deletion (#12781)
* 🧹 fix: Prune Orphaned File References on File Deletion

Deleting a file via the Manage Files tab left its file_id in every agent's
tool_resources.*.file_ids. Stubs accumulate until the frontend dedupe keys
them as duplicates and blocks all new uploads (issue #12776).

- Add removeAgentResourceFilesFromAllAgents in packages/data-schemas: a
  single updateMany/$pullAll across every EToolResources category.
- Invoke it from processDeleteRequest after db.deleteFiles so every
  referencing agent is cleaned up, not just the one passed in req.body.
- Wrap the cleanup in try/catch so a stale agent update cannot mask a
  successful file deletion.

* 🧼 fix: Prune Orphaned File References on Agent Update

Already-affected agents would stay broken even after the delete-time fix:
the stubs sit on the agent document until something strips them. Heal them
on the next save (issue #12776).

- Add collectToolResourceFileIds + stripFileIdsFromToolResources helpers
  in @librechat/api — centralizing the tool_resources traversal used by
  the controller and the follow-up migration script.
- In updateAgentHandler, check the effective tool_resources against the
  files collection. When orphans are found, either strip them from the
  incoming tool_resources (if the update sets them) or run the bulk
  cleanup (if the update leaves tool_resources untouched).

* 🧰 chore: Add Migration to Clean Up Orphaned Agent File References

Complements the delete-time and save-time fixes by healing agents that
already accumulated orphan stubs before the upgrade (issue #12776). The
script is idempotent — re-running it on a clean database is a no-op.

- Add config/migrate-orphaned-agent-files.js following the existing
  migrate-*.js convention: --dry-run by default omitted (writes by
  default) and --batch-size= tuning knob. Streams agents via cursor.
- Register migrate:orphaned-agent-files and :dry-run npm scripts.
- Reuse collectToolResourceFileIds from @librechat/api so migration and
  runtime share the same traversal logic.

* 🩹 fix: Address Codex/Copilot Review on Orphaned Agent File Cleanup

Refines the #12776 fix series based on automated review feedback.

- Scope save-time pruning to the current agent only. When a PATCH
  carries tool_resources, strip orphans from the incoming payload and
  pay the DB round-trip only then. Removes the collection-wide
  updateMany previously triggered when tool_resources was absent
  (Codex P2 / Copilot).
- Wrap the orphan check in try/catch so a transient db.getFiles
  failure can't turn a good save into a 500 (comprehensive review #1).
- Replace Object.values(EToolResources) casts with an explicit list of
  agent-side categories in both orphans.ts and agent.ts. code_interpreter
  belongs to the Assistants API and isn't a key of AgentToolResources —
  including it was a type lie and generated dead MongoDB clauses
  (comprehensive review #3, #8).
- Export TOOL_RESOURCE_KEYS from @librechat/api and consume it in the
  migration script, dropping one duplicated definition (#4).
- Cap migration results.details at 50 sample entries so the memory
  footprint stays bounded on deployments with thousands of corrupted
  agents (Codex P3).
- Add migrate:orphaned-agent-files:batch npm script to match the
  convention set by migrate-agent-permissions / migrate-prompt-permissions
  (#7).
- Add controller-level tests covering the three orphan-pruning paths:
  strip from incoming tool_resources, leave alone when tool_resources
  is absent, swallow db.getFiles errors and still save (#6).
- Back pre-existing "should validate tool_resources in updates" test's
  file_ids with real File docs — the new pruning would otherwise strip
  them, and that test is about OCR conversion / schema filtering, not
  file existence. Register the File model in beforeAll so the fixture
  works.

* 🩹 fix: Tighten TOOL_RESOURCE_KEYS Type and Align Migration Sample Output

Two follow-ups from the second review pass.

- Type data-schemas' TOOL_RESOURCE_KEYS as ReadonlyArray<keyof
  AgentToolResources> instead of readonly string[]. Data-schemas depends
  on data-provider, so the import is clean. Catches typos and aligns
  with the matching export in @librechat/api — doesn't guarantee
  exhaustiveness, but that's a TypeScript limitation, not a workspace
  one.
- Align the migration's console output with DETAIL_SAMPLE_LIMIT: print
  every collected detail (up to 50) and, when more agents were affected
  than the sample size allowed, show a truncation notice. The old hard
  cap of 25 meant affected agents in the 26-50 range were collected
  but never shown.

*  test: Add Integration Coverage for Orphan Cleanup Paths (#12776)

Exercise the delete-time and migration paths end-to-end against a real
in-memory Mongo. Catches integration bugs the isolated unit tests on
each layer couldn't.

- api/server/services/Files/process.integration.spec.js — the primary
  repro: seed an Agent + File, call processDeleteRequest, assert the
  file_id disappears from every referencing agent's tool_resources
  while unrelated agents stay untouched. Also covers the no-op case
  and confirms a failure in the new cleanup step cannot roll back the
  file deletion itself.
- api/test/migrate-orphaned-agent-files.spec.js — drives the migration
  module: --dry-run reports without writing, apply mode prunes across
  every tool_resource category, re-running is idempotent, and
  DETAIL_SAMPLE_LIMIT caps the in-memory sample on wide corruption.
  Mocks only the connect helper (the spec owns the mongoose instance)
  so the real migration code path — cursor, $pullAll, reduce — runs.

* 🔒 fix: Run Orphan Cleanup Migration in System Tenant Context

Codex P2 catch: under TENANT_ISOLATION_STRICT=true, the migration
throws on the very first Agent.countDocuments() because the tenant
isolation plugin fail-closes on queries without tenant context — which
makes migrate:orphaned-agent-files unusable on the exact deployments
most likely to have accumulated corruption.

- Wrap the scan/prune body in runAsSystem so queries bypass the tenant
  filter (SYSTEM_TENANT_ID sentinel). The migration legitimately needs
  cross-tenant visibility — this is the same pattern seedDatabase and
  the S3 refresh job already use.
- Add a regression test that spies on Agent.countDocuments() and
  asserts the active tenantStorage context is SYSTEM_TENANT_ID during
  the call. Pins the wrap against future regressions without the
  brittleness of toggling the strict-mode env var (which caches on
  first read).

Note: the delete-time and save-time paths already run inside an
authenticated HTTP request where tenantStorage.run is set by auth
middleware, so the cleanup naturally scopes to the current tenant —
which is the correct behavior there since file ownership is
tenant-scoped.

* 🧹 chore: Drop Unused path Import From Process Integration Spec

Leftover from an earlier iteration that resolved the migration path
via path.resolve before I switched to a relative require. The import
does nothing now — removing it.
2026-04-22 11:35:48 -07:00

192 lines
8.7 KiB
JSON

{
"name": "LibreChat",
"version": "v0.8.5-rc1",
"description": "",
"packageManager": "npm@11.10.0",
"workspaces": [
"api",
"client",
"packages/*"
],
"scripts": {
"update": "node config/update.js",
"add-balance": "node config/add-balance.js",
"set-balance": "node config/set-balance.js",
"list-balances": "node config/list-balances.js",
"user-stats": "node config/user-stats.js",
"rebuild:package-lock": "node config/packages",
"reinstall": "node config/update.js -l -g",
"smart-reinstall": "node config/smart-reinstall.js",
"b:reinstall": "bun config/update.js -b -l -g",
"reinstall:docker": "node config/update.js -d -g",
"update:local": "node config/update.js -l",
"update:docker": "node config/update.js -d",
"update:single": "node config/update.js -s",
"update:sudo": "node config/update.js --sudo",
"update:deployed": "node config/deployed-update.js",
"rebase:deployed": "node config/deployed-update.js --rebase",
"start:deployed": "docker compose -f ./deploy-compose.yml up -d || docker-compose -f ./deploy-compose.yml up -d",
"stop:deployed": "docker compose -f ./deploy-compose.yml down || docker-compose -f ./deploy-compose.yml down",
"upgrade": "node config/upgrade.js",
"create-user": "node config/create-user.js",
"invite-user": "node config/invite-user.js",
"list-users": "node config/list-users.js",
"reset-password": "node config/reset-password.js",
"ban-user": "node config/ban-user.js",
"delete-user": "node config/delete-user.js",
"reset-meili-sync": "node config/reset-meili-sync.js",
"update-banner": "node config/update-banner.js",
"delete-banner": "node config/delete-banner.js",
"backend": "cross-env NODE_ENV=production node api/server/index.js",
"backend:inspect": "cross-env NODE_ENV=production node --inspect --expose-gc api/server/index.js",
"backend:dev": "cross-env NODE_ENV=development npx nodemon api/server/index.js",
"backend:experimental": "cross-env NODE_ENV=production node api/server/experimental.js",
"backend:stop": "node config/stop-backend.js",
"build:data-provider": "cd packages/data-provider && npm run build",
"build:api": "cd packages/api && npm run build",
"build:data-schemas": "cd packages/data-schemas && npm run build",
"build:client": "cd client && npm run build",
"build:client-package": "cd packages/client && npm run build",
"build:packages": "npm run build:data-provider && npm run build:data-schemas && npm run build:api && npm run build:client-package",
"build": "npx turbo run build",
"build:safe": "npx turbo run build --no-daemon",
"frontend": "npm run build:data-provider && npm run build:data-schemas && npm run build:api && npm run build:client-package && cd client && npm run build",
"frontend:ci": "npm run build:data-provider && npm run build:client-package && cd client && npm run build:ci",
"frontend:dev": "cd client && npm run dev",
"e2e": "playwright test --config=e2e/playwright.config.local.ts",
"e2e:headed": "playwright test --config=e2e/playwright.config.local.ts --headed",
"e2e:a11y": "playwright test --config=e2e/playwright.config.a11y.ts --headed",
"e2e:ci": "playwright test --config=e2e/playwright.config.ts",
"e2e:debug": "cross-env PWDEBUG=1 playwright test --config=e2e/playwright.config.local.ts",
"e2e:codegen": "npx playwright codegen --load-storage=e2e/storageState.json http://localhost:3080/c/new",
"e2e:login": "npx playwright codegen --save-storage=e2e/auth.json http://localhost:3080/login",
"e2e:github": "act -W .github/workflows/playwright.yml --secret-file my.secrets",
"test:client": "cd client && npm run test:ci",
"test:api": "cd api && npm run test:ci",
"test:packages:api": "cd packages/api && npm run test:ci",
"test:packages:data-provider": "cd packages/data-provider && npm run test:ci",
"test:packages:data-schemas": "cd packages/data-schemas && npm run test:ci",
"test:all": "npm run test:client && npm run test:api && npm run test:packages:api && npm run test:packages:data-provider && npm run test:packages:data-schemas",
"e2e:update": "playwright test --config=e2e/playwright.config.js --update-snapshots",
"e2e:report": "npx playwright show-report e2e/playwright-report",
"lint:fix": "eslint --fix \"{,!(node_modules|venv)/**/}*.{js,jsx,ts,tsx}\"",
"lint": "eslint \"{,!(node_modules|venv)/**/}*.{js,jsx,ts,tsx}\"",
"format": "npx prettier --write \"{,!(node_modules|venv)/**/}*.{js,jsx,ts,tsx}\"",
"b:api": "NODE_ENV=production bun run api/server/index.js",
"b:api-inspect": "NODE_ENV=production bun --inspect run api/server/index.js",
"b:api:dev": "NODE_ENV=production bun run --watch api/server/index.js",
"b:data": "cd packages/data-provider && bun run b:build",
"b:build:client-package": "cd packages/client && bun run b:build",
"b:data-schemas": "cd packages/data-schemas && bun run b:build",
"b:build:api": "cd packages/api && bun run b:build",
"b:build:client": "cd client && bun --bun run b:build",
"b:client": "bun --bun run b:data && bun --bun run b:data-schemas && bun --bun run b:build:api && bun --bun run b:build:client-package && bun --bun run b:build:client",
"b:client:dev": "cd client && bun run b:dev",
"b:test:client": "cd client && bun run b:test",
"b:test:api": "cd api && bun run b:test",
"b:balance": "bun config/add-balance.js",
"b:list-balances": "bun config/list-balances.js",
"reset-terms": "node config/reset-terms.js",
"flush-cache": "node config/flush-cache.js",
"migrate:agent-permissions:dry-run": "node config/migrate-agent-permissions.js --dry-run",
"migrate:agent-permissions": "node config/migrate-agent-permissions.js",
"migrate:agent-permissions:batch": "node config/migrate-agent-permissions.js --batch-size=50",
"migrate:prompt-permissions:dry-run": "node config/migrate-prompt-permissions.js --dry-run",
"migrate:prompt-permissions": "node config/migrate-prompt-permissions.js",
"migrate:prompt-permissions:batch": "node config/migrate-prompt-permissions.js --batch-size=50",
"migrate:orphaned-agent-files:dry-run": "node config/migrate-orphaned-agent-files.js --dry-run",
"migrate:orphaned-agent-files": "node config/migrate-orphaned-agent-files.js",
"migrate:orphaned-agent-files:batch": "node config/migrate-orphaned-agent-files.js --batch-size=50"
},
"repository": {
"type": "git",
"url": "git+https://github.com/danny-avila/LibreChat.git"
},
"author": "",
"license": "ISC",
"bugs": {
"url": "https://github.com/danny-avila/LibreChat/issues"
},
"homepage": "https://librechat.ai/",
"devDependencies": {
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"@librechat/agents": {
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"fast-xml-parser": "5.6.0"
},
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"fast-xml-parser": "5.6.0"
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"fast-xml-parser": "5.6.0",
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"remark-gfm": {
"mdast-util-gfm-autolink-literal": "2.0.0"
},
"mdast-util-gfm": {
"mdast-util-gfm-autolink-literal": "2.0.0"
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"katex": "^0.16.21",
"rehype-katex": {
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"remark-math": {
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"langsmith": "0.4.12",
"eslint": {
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"underscore": "1.13.8",
"hono": "^4.12.4",
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"monaco-editor": {
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},
"svgo": "^2.8.2"
},
"nodemonConfig": {
"ignore": [
"api/data/",
"data/",
"client/",
"admin/",
"packages/"
]
}
}