* chore: Update axios dependency to version 1.16.0 across multiple package files
* chore: Update express-rate-limit and ip-address dependencies to versions 8.5.1 and 10.2.0 in package-lock.json and package.json
* chore: Update mongoose and hono dependencies to versions 8.23.1 and 4.12.18 across multiple package files
* fix: Add type parameters to mongoose lean queries in accessRole and aclEntry methods
* fix: Add type parameters to mongoose lean queries in action, agent, and agentCategory methods
* chore: Update moduleResolution to 'bundler' in tsconfig.json for api and data-schemas packages
* fix: Update mongoose lean queries to include type parameters across various methods for improved type safety
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