Commit graph

18 commits

Author SHA1 Message Date
Danny Avila
7129b1b1e4
📜 refactor: Improve Skill Handling Logs (#13057)
* refactor: Streamline batch upload error handling in `uploadCodeEnvFile`
* refactor: Enhance session info error logging in `getSessionInfo`
* refactor: Update error logging to use `logAxiosError` in various agent handlers and skill file processing functions
* refactor: Consolidate missing resource checks in `createToolExecuteHandler` for better clarity
2026-05-11 02:15:51 -04:00
Danny Avila
c67e2b54dc
🔐 feat: Mint Code API Auth Tokens (#13028)
* feat: Mint CodeAPI auth tokens

* style: Format CodeAPI download route

* fix: Prune CodeAPI token cache

* fix: Propagate CodeAPI managed auth

* test: Mock CodeAPI auth in traversal suite

* fix: Pass auth context to invoked skill cache

* feat: Mint CodeAPI plan context

* chore: Refresh CodeAPI auth guidance

* fix: Guard OpenID JWT fallback

* fix: Default CodeAPI JWT tenant in single-tenant mode

* chore: Update @librechat/agents to version 3.1.84 in package-lock.json and package.json files

* chore: Standardize references to Code API in comments and tests
2026-05-09 16:09:10 -04:00
Danny Avila
93c4ef4ba8
🧱 refactor: typed CodeEnvRef + kind discriminator + principal-aware sandbox cache (#12960)
* 🧱 refactor: typed CodeEnvRef + kind discriminator + tenant-aware sandbox cache

Final cutover for the LibreChat ↔ codeapi sandbox file identity. Replaces
the magic string `${session_id}/${file_id}?entity_id=...` with a typed,
discriminated `CodeEnvRef`. Pre-release lockstep deploy with codeapi
#1455 and agents #148; no legacy aliases retained.

## Final shape

```ts
type CodeEnvRef =
  | { kind: 'skill'; id: string; storage_session_id: string; file_id: string; version: number }
  | { kind: 'agent'; id: string; storage_session_id: string; file_id: string }
  | { kind: 'user';  id: string; storage_session_id: string; file_id: string };
```

`kind` drives codeapi's sessionKey: `<tenant>:<kind>:<id>[✌️<version>]`
for shared kinds, `<tenant>:user:<userId>` for user-private (auth context
provides `userId`). `version` is statically required for `kind: 'skill'`
and forbidden otherwise via discriminated union — constraint holds at
compile time on every consumer, not just codeapi's runtime validator.

`id` is sessionKey-meaningful for `'skill'` / `'agent'`; informational
only for `'user'` (codeapi resolves user identity from auth context).

## What changed

- `packages/data-provider/src/codeEnvRef.ts` — discriminated union +
  `CODE_ENV_KINDS` const-tuple keeps the runtime list and TS union
  locked together.
- Schemas: `metadata.codeEnvRef` and `SkillFile.codeEnvRef` enums
  tightened to `['skill', 'agent', 'user']`.
- `primeSkillFiles` writes `kind: 'skill'`, `id: skill._id`,
  `version: skill.version`. Cache-hit path reads `codeEnvRef`
  directly. Bumping `skill.version` on edit naturally invalidates
  the prior cache entry under the new sessionKey.
- `processCodeOutput` writes `kind: 'user'`, `id: req.user.id`. Output
  bucket is always user-scoped, regardless of which skill the
  execution invoked. New regression test pins the asymmetry.
- `primeFiles` reupload preserves `kind`/`id`/`version?` from the
  existing ref so a skill-cache-miss reupload doesn't silently demote
  to user bucket.
- `crud.js` upload functions (`uploadCodeEnvFile` /
  `batchUploadCodeEnvFiles`) thread `kind`/`id`/`version?` to the
  multipart form (codeapi #1455 option α). Without these on the wire,
  codeapi falls back to user bucketing and skill-cache invalidation
  never fires. Client-side validation mirrors codeapi's validator.
- `Files/process.js` — chat attachments use `kind: 'user'`; agent
  setup files use `kind: 'agent'`.
- Drops `entity_id` everywhere (struct, schema sub-docs, write paths,
  upload form fields). Drops `'system'` from the kind enum (no emitter
  ever existed).

## Test plan

- [x] `cd packages/data-provider && npx jest src/codeEnvRef.spec` — 4 / 4
- [x] `cd packages/data-schemas && npx jest` — 1447 / 1447
- [x] `cd packages/api && npx jest src/agents` — 81 / 81 in skillFiles +
  handlers + resources
- [x] `cd api && npx jest server/services/Files server/controllers/agents` —
  436 / 436
- [x] `cd api && npx jest server/services/Files/Code` — 98 / 98 (incl.
  new "outputs are user-scoped regardless of which skill the execution
  invoked" regression and "reupload forwards kind/id/version from
  existing ref")
- [x] `npx tsc --noEmit -p packages/data-{provider,schemas}/tsconfig.json
  && npx tsc --noEmit -p packages/api/tsconfig.json` — clean (only
  pre-existing unrelated dev errors in storage/balance, untouched here)

## Deploy notes

- **24h cache-miss burst** on first deploy. Inputs (skill caches re-prime
  under new sessionKey shape) and outputs (any pre-Phase C skill-output
  cached files become unreadable). Bounded by codeapi's 24h TTL.
- **Lockstep with codeapi #1455 and agents #148.** Either repo can land
  first since no aliases to drain, but the three deploys must overlap
  within the same maintenance window.
- **`@librechat/agents` bump to `3.1.79-dev.0`** required after agents
  #148 lands and is published.

## What this enables

Auth bridge work (JWT-based tenant/user identity between LC and codeapi)
— codeapi now derives sessionKey purely from `req.codeApiAuthContext.{
tenantId, userId}`, so the next chapter is replacing the header-asserted
user identity with a verified-claim path.

* 🩹 fix: persist execute_code uploads under codeEnvRef metadata key

Codex review P1 (chatgpt-codex-connector). `Files/process.js` was
storing the upload result under `metadata.fileIdentifier` even though:
- `uploadCodeEnvFile` now returns `{ storage_session_id, file_id }`,
  not the legacy magic string.
- The post-cutover schema (`File.metadata.codeEnvRef`) only declares
  `codeEnvRef` — mongoose strict mode silently strips unknown keys.
- All readers (`primeFiles`, `getCodeFilesByIds`,
  `categorizeFileForToolResources`, controller filtering) check
  `metadata.codeEnvRef`.

Net effect of the bug: chat-attached and agent-setup execute_code files
would lose their sandbox reference on save, and primeFiles would skip
them on subsequent code-execution turns — the file blob would still be
available locally but never re-mounted in the sandbox.

Fix: construct the full `CodeEnvRef` (`{ kind, id, storage_session_id,
file_id }`) at the write site and persist under `metadata.codeEnvRef`.
`BaseClient`'s "is this a code-env file" presence check accepts the new
shape alongside the legacy `fileIdentifier` for back-compat with any
pre-cutover records still in the database. Mirrors the same change in
`processAttachments.spec.ts` (which re-implements the BaseClient logic
for testability).

New regression tests in `process.spec.js` cover three cases:
- chat attachments (`messageAttachment=true`) → `kind: 'user'`
- agent setup (`messageAttachment=false`) → `kind: 'agent'`
- legacy `fileIdentifier` key is NOT persisted (would be schema-stripped)

* 🩹 fix: read storage_session_id on primed file refs (Codex P1)

Codex review (chatgpt-codex-connector). After Phase B's per-file
`session_id` → `storage_session_id` rename, `primeFiles` emits the
new field — but `seedCodeFilesIntoSessions` was still reading
`files[0].session_id` for the representative session and `f.session_id`
for the dedupe key. In runs with only primed attachments (no skill
seed), `representativeSessionId` was `undefined`, the function
returned the unchanged map, and `seedCodeFilesIntoSessions` silently
dropped the entire batch. The first `execute_code` call then started
without `_injected_files` and the agent couldn't see prior-turn
artifacts.

Fix:
- `codeFilesSession.ts`: read `f.storage_session_id` for both the
  dedupe key and the representative session id. JSDoc updated to
  match the new field name.
- `callbacks.js`: the two output-file persistence paths read
  `file.session_id` to pass to `processCodeOutput` — switch to
  `file.storage_session_id`. The original comment explicitly says
  this should be the STORAGE session, which is exactly the field
  Phase B renamed.
- `codeFilesSession.spec.ts`: fixture builder uses `storage_session_id`
  and `kind: 'user'` to match the post-cutover `CodeEnvFile` shape.

Lockstep coordination: this matches the post-bump shape of
`@librechat/agents` 3.1.79+. CI tsc errors against the currently-pinned
3.1.78 are expected and resolve when the dep bumps in this PR before
merge.

* 📦 chore: Bump `@librechat/agents` to version 3.1.80-dev.0 in package-lock and package.json files

* 🪪 fix: thread kind/id/version through codeapi /download URLs (Phase C α)

Symmetric fix for the upload-side wire change in 537725a. Codeapi's
`sessionAuth` middleware now requires `kind`/`id`/`version?` on every
download/freshness URL — without them it 400s with "kind must be one
of: skill, agent, user" before serving the file.

Three sites construct codeapi-side URLs that go through `sessionAuth`:

- `processCodeOutput` (`Files/Code/process.js`): `/download/<sess>/<id>`
  for freshly-generated sandbox outputs. Always `kind: 'user'` +
  `id: req.user.id` — code-output files are always user-private,
  regardless of which skill the run invoked.
- `getSessionInfo` (`Files/Code/process.js`): `/sessions/<sess>/objects/<id>`
  for the 23h freshness check. Pulls kind/id/version straight off the
  `codeEnvRef` already in scope — skill files stay skill-bucketed,
  user files stay user-bucketed.
- `/code/download/:session_id/:fileId` LC route (`routes/files/files.js`):
  proxies to codeapi for manual downloads. Code-output files only on
  this route, so `kind: 'user'` + `id: req.user.id`.

The `getCodeOutputDownloadStream` helper in `crud.js` now takes an
`identity` param, validated by a `buildCodeEnvDownloadQuery` helper
that mirrors `appendCodeEnvFileIdentity`'s shape rules: kind required
from the closed `{skill, agent, user}` set, version required for
'skill' and forbidden otherwise. Bad callers fail fast on the client
instead of round-tripping a 400.

Also cleans up two log-noise sources reported alongside the 400:

- `logAxiosError` in `packages/api/src/utils/axios.ts` was dumping
  `error.response.data` raw. With `responseType: 'arraybuffer'` that's
  a `Buffer` (~4 chars per byte after JSON-serialization); with
  `responseType: 'stream'` it's a `Readable` whose internal state
  serializes the entire ring buffer + socket. New `renderResponseData`
  decodes small buffers as UTF-8 (truncated past 2KB) and stubs streams
  as `'[stream]'`. Diagnostics stay useful, log lines stop being
  megabytes.
- `/code/download` route's catch was bare `logger.error('...', error)`,
  bypassing the redactor. Switched to `logAxiosError` so it benefits
  from the same buffer/stream handling.

Tests updated to match the new contract:
- crud.spec: `getCodeOutputDownloadStream` fixtures pass `userIdentity`;
  new cases cover skill identity (with version), bad kind rejection,
  skill-without-version rejection.
- process.spec: `getSessionInfo` test passes a full `codeEnvRef` object.

* ♻️ refactor: extract codeEnv identity helpers into packages/api

Per the project convention that new backend code lives in TypeScript
under `packages/api`, moves `appendCodeEnvFileIdentity` and
`buildCodeEnvDownloadQuery` from `api/server/services/Files/Code/crud.js`
into a new `packages/api/src/files/code/identity.ts` module.

Both helpers are pure validators that mirror codeapi's
`parseUploadSessionKeyInput` server-side rules (closed kind set,
`version` required for `'skill'` and forbidden otherwise) — they
deserve TS support and a dedicated spec rather than living as
JSDoc-typed helpers in the legacy `/api` workspace. The new module:

- Exports a `CodeEnvIdentity` interface using the
  `librechat-data-provider` `CodeEnvKind` discriminated union.
- Adds 13 unit tests in `identity.spec.ts` covering the validation
  matrix (skill+version, agent, user, and every rejection path) plus
  URL encoding for the download query.
- Re-exported from `packages/api/src/files/code/index.ts` alongside
  `classify`, `extract`, and `form`.

Consumer updates:
- `api/server/services/Files/Code/crud.js`: drops the local helpers
  and imports them from `@librechat/api`. Net -64 lines.
- `api/server/services/Files/Code/process.js`: same.
- Test mocks for `@librechat/api` in three spec files now stub the
  helpers' validation behavior locally rather than pulling them
  through `requireActual` (which would drag in provider-config
  init-time side effects). The package's `exports` field only
  surfaces the root barrel, so leaf imports aren't reachable from
  legacy `/api` test setup.

No runtime behavior change. Identity validation rules and emitted
form/query shapes are byte-for-byte identical pre/post.

* 🪪 fix: emit resource_id alongside id on _injected_files (skill 403 fix)

Companion to codeapi #1455 fix and agents 3.1.80-dev.1 — the wire
shape for shared-kind files now requires `resource_id` distinct from
the storage `id`. Without this LC change, codeapi's sessionKey
re-derivation on every shared-kind /exec rejects with 403
session_key_mismatch:

    cached:  legacy:skill:69dcf561...✌️59  (signed at upload, skill _id)
    derived: legacy:skill:ysPwEURuPk-...✌️59  (storage nanoid)

Emit sites updated:

- `primeInvokedSkills` cache-hit path: `resource_id: ref.id` (the
  persisted skill `_id` from `codeEnvRef.id`); `id: ref.file_id`
  unchanged (storage uuid).
- `primeInvokedSkills` fresh-upload path: `resource_id: skill._id.toString()`
  on every primed file (the `allPrimedFiles` builder type now carries
  the field).
- `processCodeOutput`'s `pushFile` (Code/process.js): `resource_id: ref.id`
  — for `kind: 'user'` this is informational (codeapi derives
  sessionKey from auth context) but emitted for shape uniformity
  with shared kinds.

Bumps `@librechat/agents` to `^3.1.80-dev.1` (the version that
ships the matching `CodeEnvFile.resource_id` field).

## Test plan

- [x] `cd packages/api && npx jest src/agents` — 67 / 67 pass
  (skillFiles fixtures updated to assert `resource_id` on the
  emitted CodeSessionContext.files).
- [x] `cd api && npx jest server/services/Files server/controllers/agents` —
  445 / 445 pass (process.spec fixtures updated for the reupload
  + cache-hit emission).
- [x] `npx tsc --noEmit -p packages/api/tsconfig.json` — clean.

* fix(skill-tool-call): carry resource_id through primeSkillFiles → artifact

Codeapi was 400ing every /exec following a `handle_skill` tool call
with `resource_id is invalid` (`type: 'undefined'`). Both code paths
in `primeSkillFiles` (cache-hit + fresh-upload) returned files
without `resource_id`/`kind`/`version`, and the artifact in
`handlers.ts` forwarded the stripped shape into
`tc.codeSessionContext.files` → `_injected_files`.

`primeInvokedSkills` (the NL-detected loader) had already been fixed
end-to-end; this commit aligns the tool-invoked path with the same
contract: `resource_id` = `skill._id.toString()`, `kind: 'skill'`,
`version` = the skill's monotonic counter.

Tests added to `skillFiles.spec.ts` lock the contract on
`primeSkillFiles` directly so future refactors can't silently drop
the resource identity again.

* fix(handlers.spec): align session_id → storage_session_id rename + kind discriminator

Pre-existing TS errors against the post-rename `CodeEnvFile` shape:
the test file still used `session_id` on per-file objects (renamed to
`storage_session_id` in agents Phase B/C) and was missing the `kind`
discriminator the discriminated union requires. Both inputs and the
matching `expect.toEqual(...)` mirrors updated together so the
runtime equality check still holds.

Lines 723-732 stay as-is — they sit behind `as unknown as
ToolCallRequest` and TS already skipped them.

* chore: fix `@librechat/agents`, correct version to 3.1.80-dev.0 in package.json files

* chore: bump `@librechat/agents` to version 3.1.80-dev.1 in package.json and package-lock.json

* chore: bump `@librechat/agents` to version 3.1.80-dev.2

* feat(observability): trace file priming chain from primeCodeFiles to _injected_files

Diagnosing the user-upload "files=[] on first /exec" bug requires
seeing where in the LC chain a file ref disappears. Prior to this
patch the chain (primeCodeFiles → primedCodeFiles → initialSessions
→ CodeSessionContext → _injected_files) was opaque end-to-end:
  - primeCodeFiles silently dropped files without `metadata.codeEnvRef`
  - reuploadFile catches all errors and continues with no signal
  - the handlers.ts handoff to codeapi never logged what it was sending

After this patch, a single grep on `[primeCodeFiles]` plus
`[code-env:inject]` shows the full per-file path:

  [primeCodeFiles] in: file_ids=N resourceFiles=M
  [primeCodeFiles] file=<id> path=skip reason=no-codeenvref filename=...
  [primeCodeFiles] file=<id> path=cache-hit-by-session storage_session_id=...
  [primeCodeFiles] file=<id> path=reupload reason=no-uploadtime ...
  [primeCodeFiles] file=<id> path=reupload reason=stale ...
  [primeCodeFiles] file=<id> path=reupload-success oldSession=... newSession=... newFileId=...
  [primeCodeFiles] file=<id> path=reupload-failed session=...
  [primeCodeFiles] file=<id> path=fresh-active storage_session_id=...
  [primeCodeFiles] out: returned=N skippedNoRef=M reuploadFailures=K

  [code-env:inject] tool=<name> files=N missingResourceId=K     (debug)
  [code-env:inject] M/N files missing resource_id ...           (warn)
  [code-env:inject] tool=<name> _injected_files=0 ...           (warn)

The boundary log warns when LC sends zero injected files on a
code-execution tool call — that's the user's actual symptom showing
up at the LC side instead of having to correlate against codeapi's
`Request received { files: [] }`.

Tag chosen as `[code-env:inject]` rather than `[handoff:exec]` to
avoid collision with the app-level "handoff" semantic (subagent
handoff workflow).

Structural cleanup in primeFiles: replaced the `if (ref) { ... }`
nesting with an early `if (!ref) continue` so the per-path
instrumentation hooks land at top-level scope instead of indented
inside a conditional. Behavior unchanged; pushFile / reuploadFile
identical.

Spec fixtures (handlers.spec.ts, codeFilesSession.spec.ts) updated
to include `resource_id` on `CodeEnvFile` literals — required by
the post-3.1.80-dev.2 type now installed.

## Test plan

- [x] `cd packages/api && npx jest src/agents/handlers.spec.ts src/agents/codeFilesSession.spec.ts src/agents/skillFiles.spec.ts` — 69/69 pass
- [x] `cd api && npx jest server/services/Files/Code/process.spec.js` — 84/84 pass
- [x] `npx tsc --noEmit -p packages/api` — clean
- [x] `npx eslint` on all four touched files — clean

* chore: add CONSOLE_JSON_STRING_LENGTH to .env.example for JSON log string length configuration

* fix(files): align codeapi upload filename with LC's sanitized DB filename

User-attached files for code execution were uploading to codeapi
under `file.originalname` (raw upload filename, may contain spaces /
special chars) while LC's DB record stored the sanitized form
(`sanitizeFilename(file.originalname)`, underscores). Codeapi
preserves whatever filename the upload sent, so the sandbox saw
`/mnt/data/<originalname>` while LC's `primeFiles` toolContext text
+ `_injected_files.name` referenced `file.filename` (sanitized).

Visible failure: agent gets system prompt saying

    /mnt/data/librechat_code_api_-_active_customer_-_2025-11-05.xlsx

…tries that path, hits `FileNotFoundError`, then notices the
sandbox's actual `Available files` line says

    /mnt/data/librechat code api - active customer - 2025-11-05.xlsx

…retries with spaces, succeeds. Wastes a tool call per upload and
leaks raw filenames into model context.

Fix: sanitize once and use the sanitized form in both the codeapi
upload AND the LC DB record. Sandbox path = LC toolContext text =
in-memory ref name. No drift.

Reupload path (`Code/process.js` line 867 `filename: file.filename`)
already uses the sanitized DB name, so it stays consistent with the
fresh-upload path after this change.

## Test plan

- [x] `cd api && npx jest server/services/Files/process` — 32/32 pass
- [x] `npx eslint` on the touched file — clean

* chore: bump `@librechat/agents` to version 3.1.80-dev.3 in package.json and package-lock.json
2026-05-08 12:29:43 -04:00
Danny Avila
4a5fc701d2
📂 fix: Preserve Nested Skill Paths in Code-Env Uploads (#12877)
* fix(code): preserve code env upload filepaths

* chore: Reorder import statements in crud.js
2026-04-29 08:07:46 -04:00
Danny Avila
46a86d849f
🛂 fix: Skip Inherited / Mark Skill Files Read-Only in Code-Env Pipeline (#12866)
* 🛂 fix: Skip Re-Download of Inherited Code-Env Files (No More 403 Storms)

When a bash/code-interpreter call lists or operates on inputs the user
already owns (skill files primed via primeInvokedSkills, files inherited
from a prior session), codeapi echoes those files back in the tool
result with `inherited: true`. We were treating every entry as a
generated artifact and calling processCodeOutput on each, which:

1. Hit `/api/files/code/download/<session_id>/<file_id>` with the
   user's session key. Skill files are uploaded under the skill's
   entity_id, so every download 403'd — producing dozens of
   "Unauthorized download" log lines per turn.

2. Surfaced those inputs as ghost file chips in the UI even though
   they were never generated by the run.

3. Wasted a download round-trip even when no auth boundary was
   crossed — the file is already persisted at its origin.

Fix: skip files where `file.inherited === true` in all three
artifact-files loops (`tools.js`, `createToolEndCallback`, and
`createResponsesToolEndCallback`). Skill files remain available to
subsequent calls via primeInvokedSkills / session inheritance — we
just don't redundantly re-download them.

Pairs with codeapi-side change that adds the `inherited` flag.

* 🔒 feat: Mark Skill Files as `read_only` During Code-Env Priming

Pairs with codeapi `read_only` upload flag (ClickHouse/ai#1345). When
LibreChat primes a skill into the code-env, every file in the batch
(SKILL.md plus all bundled scripts/schemas/docs) is now uploaded with
`read_only: true`. Codeapi seals these inputs at the filesystem layer
(chmod 444) and the walker echoes the original refs as `inherited:
true` regardless of whether sandboxed code modified the bytes on disk.

Without this, the previous PR's `inherited` skip handled only the
unchanged case. A modified skill file (pip writing pyc near a .py, a
script accidentally truncating LICENSE.txt, etc.) still flowed through
the modified-input branch on codeapi, got a fresh user-owned file_id,
uploaded as a "generated" artifact, and surfaced in the UI as a chip
the user couldn't actually authorize a download for.

Changes:

- `api/server/services/Files/Code/crud.js`:
  `batchUploadCodeEnvFiles({ ..., read_only })` forwards the flag as
  a multipart form field. Default `false` preserves existing behavior
  for user-attached files and prior-session inheritance.

- `packages/api/src/agents/skillFiles.ts`: type signature gains
  `read_only?: boolean`; `primeSkillFiles` passes `true`.

- `packages/api/src/agents/skillFiles.spec.ts`: assert the upload call
  carries `read_only: true`.

The flag is intentionally not skill-specific. Any future
infrastructure-input flow (system fixtures, cached datasets, etc.) can
opt in the same way.
2026-04-29 08:26:25 +09:00
Danny Avila
35bf04b26c 🧰 refactor: Unify code-execution tools (#12767)
* 🛠️ feat: Add registerCodeExecutionTools helper

Idempotently registers `bash_tool` + `read_file` in the run's tool
registry and tool-definition list via a registry `.has()` dedupe. Sets
up the single code-execution tool path shared by:

- `initializeAgent` (when an agent has `execute_code` in its tools and
  the capability is enabled for the run)
- `injectSkillCatalog` (when skills are active; unconditional read_file,
  bash_tool follows `codeEnvAvailable`)

Both callers reach the helper in the same initialization sequence, so
the second call becomes a no-op and exactly one copy of each tool
reaches the LLM — no more double registration for agents that combine
`execute_code` capability with active skills.

Unit-tested on a fresh run, idempotence (second call, overlap with
prior tooldefs, partial overlap), and the no-registry variant.

* 🔀 refactor: Route injectSkillCatalog bash_tool + read_file through registerCodeExecutionTools

The `skill` tool is still registered inline (it's skill-path-specific),
but `bash_tool` + `read_file` now flow through the shared idempotent
helper so a prior registration from the execute_code path doesn't
produce a duplicate copy later in the same run. Behavior preserved:

- `read_file` always registers when any active skill is in scope —
  manually-primed `disable-model-invocation: true` skills still need it
  to load `references/*` from storage.
- `bash_tool` follows `codeEnvAvailable` exactly as before.

Adds a test pinning the cross-call dedupe: when `injectSkillCatalog`
runs AFTER `registerCodeExecutionTools` has already seeded the registry
+ tool definitions with bash_tool/read_file, the resulting
`toolDefinitions` still contains exactly one copy of each.

* 🪄 feat: Expand `execute_code` tool name into bash_tool + read_file at initialize-time

When an agent's `tools` include `execute_code` and the `execute_code`
capability is enabled for the run, `initializeAgent` now registers
`bash_tool` + `read_file` via `registerCodeExecutionTools` before
`injectSkillCatalog`. The legacy `execute_code` tool definition is no
longer handed to the LLM — `execute_code` remains on the agent
document as a capability-trigger marker, but the runtime expands it
into the skill-flavored tool pair.

Call ordering matters: the `execute_code` registration runs BEFORE
`injectSkillCatalog`, so the skill path's own `registerCodeExecutionTools`
call inside `injectSkillCatalog` becomes a no-op via the registry's
`.has()` check. Exactly one copy of each tool reaches the LLM whether
the agent has:

- only `execute_code` (legacy path)
- only skills
- both

No data migration needed — `agent.tools: ['execute_code']` stays in
the DB unchanged; the expansion is a runtime operation.

Three tests cover the matrix: execute_code + capability on →
bash_tool + read_file registered; execute_code + capability off →
neither registered; no execute_code + capability on → neither
registered.

* 🗑️ refactor: Drop CodeExecutionToolDefinition from the builtin registry

Removes the legacy `execute_code` entry from `agentToolDefinitions` and
the corresponding import. With the initialize-time expansion in place,
nothing consults `getToolDefinition('execute_code')` for a tool schema
any more — the capability gate still filters on the string
`execute_code`, but the actual tool definitions the LLM sees come from
`registerCodeExecutionTools` (i.e. `bash_tool` + `read_file`).

`loadToolDefinitions` in `packages/api/src/tools/definitions.ts`
silently drops `execute_code` when it no longer resolves in the
registry — that's the expected path and is now covered by an updated
test. No caller of `getToolDefinition('execute_code')` expects a
non-undefined result after this change.

* 🔌 refactor: Read CODE_API_KEY from env for primeCodeFiles + PTC

Finishes the Phase 4 server-env-keyed rollout on the two remaining
`loadAuthValues({ authFields: [EnvVar.CODE_API_KEY] })` sites in
`ToolService.js`:

- `primeCodeFiles` (user-attached file priming on execute_code agents)
- Programmatic Tool Calling (`createProgrammaticToolCallingTool`)

Both now read `process.env[EnvVar.CODE_API_KEY]` directly, matching
`bash_tool`'s pattern. The per-user plugin-auth path is no longer
consulted for code-env credentials anywhere in the hot path — the
agents library owns the actual tool-call execution and also reads the
env var internally.

Priming still fires for existing user-file workflows so the legacy
`toolContextMap[execute_code]` hint ("files available at /mnt/data/...")
stays in the prompt; only the key lookup changed.

* 🔧 fix: Type the pre-seeded dedupe-test tools as LCTool

CI TypeScript type checks caught `{ parameters: {} }` in the new
cross-call dedupe test: `LCTool.parameters` is a `JsonSchemaType`,
not `{}`. Use `{ type: 'object', properties: {} }` and type the
local registry Map through the parameter-derived shape so the
pre-seeded values match what `toolRegistry.set` expects.

* 🛡️ fix: Run execute_code expansion before GOOGLE_TOOL_CONFLICT gate

Codex review caught a latent regression: the original Phase 8 placement
ran `registerCodeExecutionTools` after `hasAgentTools` was computed,
so an execute-code-only agent on Google/Vertex with provider-specific
`options.tools` populated would no longer trip `GOOGLE_TOOL_CONFLICT`
— the legacy `CodeExecutionToolDefinition` used to populate
`toolDefinitions` before the guard, but after dropping it from the
registry, `toolDefinitions` stayed empty until my expansion ran
downstream of the guard. Mixed provider + agent tools would silently
flow through to the LLM.

Fix moves the `execute_code` expansion to BEFORE `hasAgentTools`
computation. `bash_tool` + `read_file` now contribute to the check
the same way the legacy `execute_code` def did. Covered by a new
test that pins the Google+execute_code+provider-tools scenario —
the `rejects.toThrow(/google_tool_conflict/)` path would have
silently passed on the prior placement.

* 🔗 fix: Thread codeEnvAvailable through handoff sub-agents

Round-2 codex review caught the other half of the execute_code
expansion gap: `discoverConnectedAgents` omitted `codeEnvAvailable`
from its forwarded `initializeAgent` params, so handoff sub-agents
with `agent.tools: ['execute_code']` lost the `bash_tool` + `read_file`
registration (pre-Phase 8 the legacy `CodeExecutionToolDefinition`
would have landed in their `toolDefinitions` via the registry).

- Add `codeEnvAvailable?` to `DiscoverConnectedAgentsParams` and
  forward it verbatim on every sub-agent `initializeAgent` call.
- Update the three JS call sites that construct the primary's
  `codeEnvAvailable` (`services/Endpoints/agents/initialize.js`,
  `controllers/agents/openai.js`, `controllers/agents/responses.js`)
  to pass the same flag into `discoverConnectedAgents` — one
  authoritative source per request.
- Two regression tests in `discovery.spec.ts` pin the true/false
  passthrough so a future refactor that drops the param-forwarding
  surfaces immediately.

Left intentionally unchanged: `packages/api/src/agents/openai/service.ts`
(public API helper with no in-repo caller). External consumers of
`createAgentChatCompletion` who want code execution should pass a
`codeEnvAvailable`-aware `initializeAgent` via `deps` — documenting
the full public-API surface is out of scope for this Phase 8 PR.

* 🔗 fix: Thread codeEnvAvailable through addedConvo + memory-agent paths

Round-3 codex review caught the last two production `initializeAgent`
callers missing the Phase-8 capability flag:

- `api/server/services/Endpoints/agents/addedConvo.js` (multi-convo
  parallel agent execution). Added `codeEnvAvailable` to
  `processAddedConvo`'s destructured params and forwarded it into
  the per-added-agent `initializeAgent` call. Caller in
  `api/server/services/Endpoints/agents/initialize.js` passes the
  same `codeEnvAvailable` it computed for the primary.
- `api/server/controllers/agents/client.js` (`useMemory` — memory
  extraction agent). Computes its own `codeEnvAvailable` from
  `appConfig?.endpoints?.[EModelEndpoint.agents]?.capabilities` and
  forwards into `initializeAgent`. Memory agents rarely list
  `execute_code`, but if one does, pre-Phase 8 they got the legacy
  `execute_code` tool registered unconditionally — the passthrough
  restores parity.

With this, every production caller of `initializeAgent` explicitly
resolves the capability: main chat flow (primary + handoff), OpenAI
chat completions (primary + handoff), Responses API (primary + handoff),
added convo parallel agents, and memory agents. The one remaining
caller, `packages/api/src/agents/openai/service.ts::createAgentChatCompletion`,
is a public API helper with no in-repo consumer (external callers
must pass a capability-aware `initializeAgent` via `deps`).

* 🪤 fix: Remove duplicate appConfig declaration causing TDZ ReferenceError

The Responses API controller had TWO `const appConfig = req.config;`
bindings inside `createResponse`: one at the top of the function
(added by the Phase 4 `bash_tool` decouple) and one inside the try
block (added by the polish PR #12760). Because `const` is block-scoped
with a temporal dead zone, the inner redeclaration put `appConfig` in
TDZ for the entire try block, so any earlier reference inside the
try — notably `appConfig?.endpoints?.[EModelEndpoint.agents]?.allowedProviders`
at line 348 — threw `ReferenceError: Cannot access 'appConfig'
before initialization`. The error was silently swallowed by the
outer try/catch, leaving `recordCollectedUsage` unreached and the
six `responses.unit.spec.js` token-usage tests failing.

Removing the inner redeclaration fixes the six failing tests
(verified: 11/11 pass locally post-fix, 0 regressions elsewhere).
The outer function-scoped binding already provides `appConfig` to
every downstream reference.

* 🔗 fix: Thread codeEnvAvailable through the OpenAI chat-completion public API

Round-4 codex review (legitimate on the type-safety angle, even though the
runtime concern was already covered): the `createAgentChatCompletion`
helper defines its own narrower `InitializeAgentParams` interface locally,
and the type was missing `codeEnvAvailable`. External consumers who
supply a capability-aware `deps.initializeAgent` couldn't route
`codeEnvAvailable` through without a type-cast workaround.

- Widen the local `InitializeAgentParams` interface to include
  `codeEnvAvailable?: boolean` (matches the real
  `packages/api/src/agents/initialize.ts` type).
- Derive `codeEnvAvailable` inside `createAgentChatCompletion` from
  `deps.appConfig?.endpoints?.agents?.capabilities` (the same source
  the in-repo controllers use) and forward to `deps.initializeAgent`.
  Uses a string literal `'execute_code'` lookup so this file stays free
  of a `librechat-data-provider` import — keeping the dependency surface
  of the public helper minimal.

With this, external consumers of `createAgentChatCompletion` who pass
`appConfig` with the agents capabilities get `bash_tool` + `read_file`
registration automatically; consumers who don't pass `appConfig` retain
the existing "explicit opt-in" semantics (the flag stays `undefined`,
expansion is skipped).

* 🧹 chore: Review-driven polish — observability log, JSDoc DRY, test gaps, no-op allocation

Addresses the comprehensive review of PR #12767:

- **Finding #1** (MINOR, observability): `initializeAgent` now emits a
  debug log when an agent lists `execute_code` in its tools but the
  runtime gate is off (`params.codeEnvAvailable` !== true). The
  event-driven `loadToolDefinitionsWrapper` path doesn't log
  capability-disabled warnings, so without this the tool silently
  vanishes from the LLM's definitions with zero trace. Operators
  debugging "why isn't code interpreter working?" now get a signal at
  the initialize layer.

- **Finding #5** (NIT, allocation): `registerCodeExecutionTools` now
  returns the input `toolDefinitions` array by reference on the no-op
  path (both tools already registered by a prior caller in the same
  run) instead of allocating a fresh spread array every time. The
  common dual-call scenario — `initializeAgent` then
  `injectSkillCatalog` — saves one O(n) copy per request.

- **Finding #4** (NIT, DRY): Collapsed the duplicated 6-line JSDoc
  comment in `openai.js`, `responses.js`, and `addedConvo.js` into
  either a one-line `@see DiscoverConnectedAgentsParams.codeEnvAvailable`
  pointer (the two JS call sites) or a compact 3-line block referring
  back to the canonical source (addedConvo's @param).

- **Finding #2** (MINOR, test gap): Added
  `api/server/services/Endpoints/agents/addedConvo.spec.js` with three
  cases covering `codeEnvAvailable=true`, `codeEnvAvailable=false`,
  and omitted (undefined) passthrough. A future refactor that drops
  the param from destructuring now surfaces here instead of silently
  regressing multi-convo parallel agents with `execute_code`.

- **Finding #3** (MINOR, test gap): Added
  `api/server/controllers/agents/__tests__/client.memory.spec.js`
  pinning the capability-flag derivation that `AgentClient::useMemory`
  uses — six cases covering present/absent/null/undefined config shapes
  plus an enum-literal pin (`'execute_code'` / `'agents'`). Catches
  enum renames or config-path shifts that would otherwise silently
  strip `bash_tool` + `read_file` from memory agents.

Finding #7 (jest.mock scoping, confidence 40) left as-is: the
reviewer's own risk assessment noted `buildToolSet` doesn't touch
the mocked exports, and restructuring a file-level `jest.mock` to
`jest.doMock` + dynamic `import()` introduces more complexity than
the speculative risk justifies. The existing mock is scoped to the
test file and contains the same stubs the adjacent
`skills.test.ts` already uses.

Finding #6 (PR description commit count) addressed out-of-band via
PR description update.

All existing tests pass, typecheck clean, lint clean across touched
files. New tests: 9 cases across 2 new spec files.

* 🧽 refactor: Replace hardcoded 'execute_code' string with AgentCapabilities enum in service.ts

Follow-up review (conf 55) caught that `openai/service.ts`'s Phase 8
`codeEnvAvailable` derivation used the literal `'execute_code'` while
every in-repo controller uses `AgentCapabilities.execute_code` from
`librechat-data-provider`. The file deliberately uses local type
interfaces to keep the public API helper's type surface small, but
that pattern was never a ban on single-value imports from the data
provider — `packages/api` already depends on it. Importing the enum
value means a future rename of `AgentCapabilities.execute_code`
propagates to this file automatically, matching the in-repo
controllers' behavior.

Other follow-up findings left as-is per the reviewer's own verdict:

- #2 (memory spec mirrors the production expression rather than
  calling `AgentClient::useMemory` directly): reviewer flagged as
  "not blocking" / "design-philosophy observation." The test file's
  JSDoc already explicitly documents the tradeoff and pins the enum
  literals to catch the most likely drift vector. Standing up
  `AgentClient` + all its mocks for a one-line regression guard is
  disproportionate.
- #3 (`addedConvo.spec.js` mock signature vs. underlying
  `loadAddedAgent` arity): reviewer's own confidence 25 noted the
  mock matches the wrapper's actual call pattern in the production
  file. Not a real gap.
- #4 was self-retracted as a false alarm.

* 🗑️ refactor: Fully deprecate CODE_API_KEY — remove all LibreChat-side references

The code-execution sandbox no longer authenticates via a per-run
`CODE_API_KEY` (frontend or backend). Auth moved server-side into the
agents library / sandbox service, so LibreChat drops every reference:

**Backend plumbing:**
- `api/server/services/Files/Code/crud.js`: `getCodeOutputDownloadStream`,
  `uploadCodeEnvFile`, `batchUploadCodeEnvFiles` no longer accept
  `apiKey` or send the `X-API-Key` header.
- `api/server/services/Files/Code/process.js`: `processCodeOutput`,
  `getSessionInfo`, `primeFiles` drop the `apiKey` param throughout.
- `api/server/services/ToolService.js`: stop reading
  `process.env[EnvVar.CODE_API_KEY]` for `primeCodeFiles` and PTC; the
  agents library handles auth internally. Remove the now-dead
  `loadAuthValues` + `EnvVar` imports. Drop the misleading
  "LIBRECHAT_CODE_API_KEY" hint from the bash_tool error log.
- `api/server/services/Files/process.js`: remove the `loadAuthValues`
  call around `uploadCodeEnvFile`.
- `api/server/routes/files/files.js`: code-env file download no longer
  fetches a per-user key.
- `api/server/controllers/tools.js`: `execute_code` is no longer a
  tool that needs verifyToolAuth with `[EnvVar.CODE_API_KEY]` — the
  endpoint always reports system-authenticated so the client skips
  the key-entry dialog. `processCodeOutput` called without `apiKey`.
- `api/server/controllers/agents/callbacks.js`: `processCodeOutput`
  invoked without the loadAuthValues round trip, for both LegacyHandler
  and Responses-API handlers.
- `api/app/clients/tools/util/handleTools.js`: `createCodeExecutionTool`
  called with just `user_id` + files.

**packages/api:**
- `packages/api/src/agents/skillFiles.ts`: `PrimeSkillFilesParams`,
  `PrimeInvokedSkillsDeps`, `primeSkillFiles`, `primeInvokedSkills` all
  drop the `apiKey` param; the gate is purely `codeEnvAvailable`.
- `packages/api/src/agents/handlers.ts`: `handleSkillToolCall` drops
  the `process.env[EnvVar.CODE_API_KEY]` read; skill-file priming is
  now gated solely on `codeEnvAvailable`. `ToolExecuteOptions`
  signatures drop apiKey from `batchUploadCodeEnvFiles` and
  `getSessionInfo`.
- `packages/api/src/agents/skillConfigurable.ts`: JSDoc no longer
  references the env var.
- `packages/api/src/tools/classification.ts`: PTC creation no longer
  gated on `loadAuthValues`; `buildToolClassification` drops the
  `loadAuthValues` dep entirely (no LibreChat-side callers need it for
  this path anymore).
- `packages/api/src/tools/definitions.ts`: `LoadToolDefinitionsDeps`
  drops the `loadAuthValues` field.

**Frontend:**
- Delete `client/src/hooks/Plugins/useAuthCodeTool.ts`,
  `useCodeApiKeyForm.ts`, and
  `client/src/components/SidePanel/Agents/Code/ApiKeyDialog.tsx` —
  the install/revoke dialogs for CODE_API_KEY are fully dead.
- `BadgeRowContext.tsx`: drop `codeApiKeyForm` from the context type and
  provider. `codeInterpreter` toggle treated as always authenticated
  (sandbox auth is server-side).
- `ToolsDropdown.tsx`, `ToolDialogs.tsx`, `CodeInterpreter.tsx`,
  `RunCode.tsx`, `SidePanel/Agents/Code/Action.tsx` +`Form.tsx`: all
  API-key dialog trigger refs, "Configure code interpreter" gear
  buttons, and auth-verification plumbing removed. The
  "Code Interpreter" toggle is now a plain `AgentCapabilities.execute_code`
  checkbox — no key-entry gate.
- `client/src/locales/en/translation.json`: drop the three
  `com_ui_librechat_code_api*` keys and `com_ui_add_code_interpreter_api_key`.
  Other locales are externally automated per CLAUDE.md.

**Config:**
- `.env.example`: remove the `# LIBRECHAT_CODE_API_KEY=your-key` section
  and its header.

**Tests:**
- `crud.spec.js`: assertions flipped to pin "no X-API-Key header" and
  "no apiKey param".
- `skillFiles.spec.ts`: removed env-var save/restore; tests now pin
  that the batch-upload path is gated solely on `codeEnvAvailable` and
  that no apiKey is threaded through.
- `handlers.spec.ts`: same — just the `codeEnvAvailable` gate pins
  remain.
- `classification.spec.ts`: remove the two tests that asserted
  `loadAuthValues` was (not) called for PTC.
- `definitions.spec.ts`: drop every `loadAuthValues: mockLoadAuthValues`
  entry from the deps shape.
- `process.spec.js`: strip the mock of `EnvVar.CODE_API_KEY`.

**Comment hygiene:**
- `tools.ts`, `initialize.ts`, `registry/definitions.ts`: shortened
  stale comment references to "legacy `execute_code` tool" without
  naming the retired env var.

Tests verified: 678 packages/api tests pass, 836 backend api tests
pass. Typecheck clean, lint clean. Only remaining CODE_API_KEY
mentions in the code are two regression-guard assertions:
- `crud.spec.js`: pins "no X-API-Key header" stays absent.
- `skillConfigurable.spec.ts`: pins `configurable` never grows a
  `codeApiKey` field.

* 🧹 chore: Remove the last two CODE_API_KEY name mentions in LibreChat

Follow-up to the prior full deprecation commit: two tests still named
the retired identifier in their regression-guard assertions.

- `packages/api/src/agents/skillConfigurable.spec.ts`: drop the
  "does not inject a codeApiKey key" test. The `codeApiKey` field is
  gone from the production configurable shape, so an absence-assertion
  naming it re-introduces the retired identifier in code.
- `api/server/services/Files/Code/crud.spec.js`: rename the
  "without an X-API-Key header" case back to "should request stream
  response from the correct URL" and drop the
  `expect(headers).not.toHaveProperty('X-API-Key')` assertion. The
  surrounding request-shape checks (URL, timeout, responseType) still
  pin the behavior; the explicit header-absence line was named-after
  the deprecated contract.

Result: `grep -rn "CODE_API_KEY\|codeApiKey\|LIBRECHAT_CODE_API_KEY"`
against the LibreChat source tree returns zero hits. The only
remaining `X-API-Key` strings in this repo are on unrelated OpenAPI
Action + MCP server auth configurations, where the string is
user-facing config, not a LibreChat-owned identifier.

Tests: 677 packages/api pass (2 pre-existing summarization e2e failures
unrelated); 126 api-workspace controller/service tests pass.
Typecheck and lint clean.

* 🎯 fix: Narrow codeEnvAvailable to per-agent (admin cap AND agent.tools)

Before this commit, `codeEnvAvailable` was computed in the three JS
controllers as the admin-level capability flag only
(`enabledCapabilities.has(AgentCapabilities.execute_code)`) and passed
through `initializeAgent` → `injectSkillCatalog` / `primeInvokedSkills` /
`enrichWithSkillConfigurable` unchanged. A skills-only agent whose
`tools` array didn't include `execute_code` still got `bash_tool`
registered (via `injectSkillCatalog`) and skill files re-primed to the
sandbox on every turn — wrong, because the agent never opted in to
code execution.

**Fix:** `initializeAgent` now computes the per-agent effective value
once as `params.codeEnvAvailable === true && agent.tools.includes(Tools.execute_code)`,
reuses the same boolean for:

1. The `execute_code` → `bash_tool + read_file` expansion gate
   (previously already consulted `agent.tools`; now shares the single
   `effectiveCodeEnvAvailable` binding).
2. The `injectSkillCatalog` call (previously got the raw admin flag).
3. The returned `InitializedAgent.codeEnvAvailable` field (new, typed as
   required boolean).

**Controllers (initialize.js, openai.js, responses.js):** store
`primaryConfig.codeEnvAvailable` in `agentToolContexts.set(primaryId, ...)`,
capture `config.codeEnvAvailable` in every handoff `onAgentInitialized`
callback, and read it from the per-agent ctx inside the
`toolExecuteOptions.loadTools` runtime closure. The hoisted
`const codeEnvAvailable = enabledCapabilities.has(...)` locals in the
two OpenAI-compat controllers are gone — they were shadowing the
narrowed per-agent value.

**primeInvokedSkills:** `handlePrimeInvokedSkills` in
`services/Endpoints/agents/initialize.js` now uses
`primaryConfig.codeEnvAvailable` (per-agent, narrowed) instead of the
raw admin flag. A skills-only primary agent won't re-prime historical
skill files to the sandbox even when the admin enabled the capability
globally.

**Efficiency:** one extra `&&` in `initializeAgent`. No runtime hot-path
cost — the `includes()` scan on `agent.tools` was already happening for
the `execute_code` expansion gate; it's now just bound to a local. Tool
execution closures read `ctx.codeEnvAvailable === true` (property
access + strict equality, O(1)).

**Ephemeral-agent note:** per-agent narrowing is authoritative for both
persisted and ephemeral flows. The ephemeral toggle
(`ephemeralAgent.execute_code`) is reconciled into `agent.tools`
upstream in `packages/api/src/agents/added.ts`, so
`agent.tools.includes('execute_code')` is the single source of truth
by the time `initializeAgent` runs.

**Tests:** two new regression tests pin the narrowing contract:

- `initialize.test.ts` — four-quadrant matrix on
  `InitializedAgent.codeEnvAvailable` (cap on × agent asks, cap on ×
  doesn't ask, cap off × asks, neither). Catches future refactors that
  drop either half of the AND.
- `skills.test.ts` — `injectSkillCatalog` with `codeEnvAvailable: false`
  against an active skill catalog must NOT register `bash_tool` even
  though it still registers `read_file` + `skill`. This is the state
  a skills-only agent gets post-narrowing.

All 191 affected packages/api tests pass + 836 backend api tests pass.
Typecheck clean, lint clean.

* 🧽 refactor: Comprehensive-review polish — hoist tool defs, pin verifyToolAuth contract, doc appConfig

Addresses the comprehensive review of Phase 8. Findings mapped:

**#1 (MINOR): `verifyToolAuth` unconditional auth for execute_code**
- Added doc comment explicitly stating the deployment contract
  (admin capability → reachable sandbox; no per-check health probe
  to keep UI-gate queries O(1)).
- New `api/server/controllers/__tests__/tools.verifyToolAuth.spec.js`
  with 4 regression tests pinning the contract:
  1. `authenticated: true` + `SYSTEM_DEFINED` for execute_code.
  2. 404 for unknown tool IDs.
  3. `loadAuthValues` is never consulted (catches a future revert
     that would resurface the per-user key-entry dialog).
  4. Response `message` is never `USER_PROVIDED`.

**#2 (MINOR): `openai/service.ts` undocumented `appConfig` dependency**
- Expanded the `ChatCompletionDependencies.appConfig` JSDoc to spell
  out that omitting it silently disables code execution for agents
  with `execute_code` in their tools. External consumers of
  `createAgentChatCompletion` now have the contract documented at
  the type boundary.

**#5 (NIT): `registerCodeExecutionTools` re-allocates tool defs**
- Hoisted `READ_FILE_DEF` and `BASH_TOOL_DEF` to module-level
  `Object.freeze`d constants. The shapes derive entirely from
  static `@librechat/agents` exports, so a single frozen object per
  tool is safe to share across every agent init. Eliminates the
  ~4-property allocations on every call (including the common
  second-call no-op path).

**#6 (NIT): Verbose history-priming comment in initialize.js**
- Trimmed the 16-line `handlePrimeInvokedSkills` block to a 5-line
  summary with `@see InitializedAgent.codeEnvAvailable` pointer.
  The canonical narrowing explanation lives on the type; the
  controller comment is just the ACL-vs-capability rationale.

**Skipped:**

- #3 (memory spec tests a mirror function): reviewer self-dismissed
  as a design tradeoff; the enum-literal pin already catches the
  highest-risk drift vector.
- #4 (cross-repo contract for `createCodeExecutionTool`): user will
  explicitly install the latest `@librechat/agents` dev version
  once the companion PR publishes, so the version pin will be
  authoritative.
- #7 (migration/deprecation note for self-hosters): out of scope
  per user direction — release notes handle this.

Tests verified: 679 packages/api + 840 backend api tests pass.
Typecheck + lint clean.

* 🔧 chore: Update @librechat/agents version to 3.1.68-dev.1 across package-lock and package.json files

This commit updates the version of the `@librechat/agents` package from `3.1.68-dev.0` to `3.1.68-dev.1` in the `package-lock.json` and relevant `package.json` files. This change ensures consistency across the project and incorporates any updates or fixes from the new version.
2026-04-25 04:02:01 -04:00
Danny Avila
64ec5f18b8 ⚙️ feat: Skill runtime integration: catalog, tools, execution, file priming (#12649)
* feat: Skill runtime integration — catalog injection, tool registration, execute handler

Wires the @librechat/agents SkillTool primitive into LibreChat's agent runtime:

**Enums:**
- Add `skills` to AgentCapabilities + defaultAgentCapabilities

**Data layer:**
- Add `getSkillByName(name, accessibleIds)` — compound query that
  combines name lookup + ACL check in one findOne

**Agent initialization (packages/api/src/agents/initialize.ts):**
- Accept `accessibleSkillIds` param and `listSkillsByAccess` db method
- Query accessible skills, format catalog via `formatSkillCatalog()`,
  append to `additional_instructions` (appears in agent system prompt)
- Register `SkillToolDefinition` + `createSkillTool()` when catalog
  is non-empty (tool appears in model's tool list)
- Store `accessibleSkillIds` and `skillCount` on InitializedAgent

**Execute handler (packages/api/src/agents/handlers.ts):**
- Add `getSkillByName` to `ToolExecuteOptions`
- `handleSkillToolCall()` intercepts `Constants.SKILL_TOOL`:
  extracts skillName, loads body from DB with ACL check,
  substitutes $ARGUMENTS, returns ToolExecuteResult with
  injectedMessages (skill body as isMeta user message)

**Caller wiring:**
- initialize.js: query skill IDs via findAccessibleResources,
  pass to initializeAgent + store on agentToolContexts,
  add getSkillByName to toolExecuteOptions,
  pass accessibleSkillIds through loadTools configurable
- openai.js + responses.js: same pattern for their flows

Requires @librechat/agents >= 3.1.65 (PR #91 exports).

* feat: Skills toggle in tools menu + backend capability gating

Frontend:
- Add skills?: boolean to TEphemeralAgent type
- Add LAST_SKILLS_TOGGLE_ to LocalStorageKeys for persistence
- Add skillsEnabled to useAgentCapabilities hook
- Add skills useToolToggle to BadgeRowContext with localStorage init
- New Skills.tsx badge component (Scroll icon, cyan theme,
  permission-gated via PermissionTypes.SKILLS)
- Add skills entry to ToolsDropdown with toggle + pin
- Render Skills badge in BadgeRow ephemeral section

Backend:
- Extract injectSkillCatalog() into packages/api/src/agents/skills.ts
  (reduces initializeAgent module size, reusable helper)
- initializeAgent delegates to helper instead of inline block
- Capability-gate the findAccessibleResources query:
  - Agents endpoint: checks AgentCapabilities.skills in admin config
  - OpenAI/Responses controllers: checks ephemeralAgent.skills toggle
- ACL query runs once per run, result shared across all agents

* refactor: remove createSkillTool() instance from injectSkillCatalog

SkillTool is event-driven only. The tool definition in toolDefinitions
is sufficient for the LLM to see the tool schema. No tool instance is
needed since the host handler intercepts via ON_TOOL_EXECUTE before
tool.invoke() is ever called.

Removes tools from InjectSkillCatalogParams/Result, drops the
createSkillTool import.

* feat: skill file priming, bash tool, and invoked skills state

Multi-file skill support:
- New primeSkillFiles() helper (packages/api/src/agents/skillFiles.ts)
  uploads skill files + SKILL.md body to code execution environment
- handleSkillToolCall primes files on invocation when skill.fileCount > 0,
  returns session info as artifact so ToolNode stores the session
- Skill-primed files available to subsequent bash/code tool calls

Bash tool auto-registration:
- BashExecutionToolDefinition added alongside SkillToolDefinition when
  skills are enabled, giving the model a bash tool for running scripts

Conversation state:
- Add invokedSkillIds field to conversation schema (Mongoose + Zod)
- handleSkillToolCall updates conversation with $addToSet on success
- Enables re-priming skill files on subsequent runs (future)

Dependency wiring:
- Pass listSkillFiles, getStrategyFunctions, uploadCodeEnvFile,
  updateConversation through ToolExecuteOptions
- Pass req and codeApiKey through mergedConfigurable
- All three controller entry points wired (initialize.js, openai.js,
  responses.js)

* fix: load bash_tool instance in loadToolsForExecution, remove file listing

- Add createBashExecutionTool to loadToolsForExecution alongside PTC/ToolSearch
  pattern: loads CODE_API_KEY, creates bash tool instance on demand
- Add BASH_TOOL and SKILL_TOOL to specialToolNames set so they don't go
  through the generic loadTools path (bash is created here, skill is
  intercepted in handler before tool.invoke)
- Remove file name listing from skill content text — it's the skill
  author's responsibility to disclose files in SKILL.md, not the framework

* feat: batch upload for skill files, replace sequential uploads

- Add batchUploadCodeEnvFiles() to crud.js: single POST to /upload/batch
  with all files in one multipart request, returns shared session_id
- Rewrite primeSkillFiles to collect all streams (SKILL.md + bundled files)
  then do one batch upload instead of N sequential uploads
- Replace uploadCodeEnvFile with batchUploadCodeEnvFiles across all callers
  (handlers.ts, initialize.js, openai.js, responses.js)

* refactor: remove invokedSkillIds from conversation schema

Skills aren't re-loaded between runs, so conversation-level state for
invoked skills doesn't help. Skill state will live on messages instead
(like tool_search discoveredTools and summaries), enabling in-place
re-injection on follow-up runs.

Removes invokedSkillIds from: convo Mongoose schema, IConversation
interface, Zod schema, ToolExecuteOptions.updateConversation, and
all three caller wiring points.

* feat: smart skill file re-priming with session freshness checking

Schema:
- Add codeEnvIdentifier field to ISkillFile (type + Mongoose schema)
- Add updateSkillFileCodeEnvIds batch method (uses tenantSafeBulkWrite)
- Export checkIfActive from Code/process.js

Extraction:
- Add extractInvokedSkillsFromHistory() to run.ts — scans message
  history for AIMessage tool_calls where name === 'skill', extracts
  skillName args. Follows same pattern as extractDiscoveredToolsFromHistory.

Smart re-priming in primeSkillFiles:
- Before batch uploading, checks if existing codeEnvIdentifiers are
  still active via getSessionInfo + checkIfActive (23h threshold)
- If session is still active, returns cached references (zero uploads)
- If stale or missing, batch-uploads everything and persists new
  identifiers on SkillFile documents (fire-and-forget)
- Single session check covers all files (batch shares one session_id)

Wiring:
- Pass getSessionInfo, checkIfActive, updateSkillFileCodeEnvIds
  through ToolExecuteOptions and all three controller entry points

* feat: wire skill file re-priming at run start via initialSessions

Flow:
1. initialize.js creates primeInvokedSkills callback with all deps
2. client.js calls it with message history before createRun
3. extractInvokedSkillsFromHistory scans for skill tool calls
4. For each invoked skill with files, primeSkillFiles uploads/checks
5. Returns initialSessions map passed to createRun
6. createRun passes initialSessions to Run.create (via RunConfig)
7. Run constructor seeds Graph.sessions, making skill files available
   to subsequent bash/code tool calls via ToolNode session injection

Requires @librechat/agents with initialSessions on RunConfig (PR #94).

* refactor: use CODE_EXECUTION_TOOLS set for code tool checks

Import CODE_EXECUTION_TOOLS from @librechat/agents and replace inline
constant checks in handlers.ts and callbacks.js. Fixes missing bash
tool coverage in the session context injection (handlers.ts) and code
output processing (callbacks.js).

* refactor: move primeInvokedSkills to packages/api, add skill body re-injection

Moves primeInvokedSkills from an inline closure in initialize.js (with
dynamic requires) to a proper exported function in packages/api
skillFiles.ts with explicit typed dependencies.

Key changes:
- primeInvokedSkills now returns both initialSessions (for file priming)
  AND injectedMessages (skill bodies for context continuity)
- createRun accepts invokedSkillMessages and appends skill bodies to
  systemContent so the model retains skill instructions across runs
- initialize.js calls the packaged function with all deps passed explicitly
- client.js passes both initialSessions and injectedMessages to createRun

* fix: move dynamic requires to top-level module imports

Move primeInvokedSkills, getStrategyFunctions, batchUploadCodeEnvFiles,
getSessionInfo, and checkIfActive from inline requires to top-level
module requires where they belong.

* refactor: skill body reconstruction via formatAgentMessages, not systemContent

Replaces the lazy systemContent approach with proper message-level
reconstruction:

SDK (formatAgentMessages):
- New invokedSkillBodies param (Map<string, string>)
- Reconstructs HumanMessages after skill ToolMessages at the correct
  position in the message sequence, matching where ToolNode originally
  injected them

LibreChat:
- extractInvokedSkillsFromPayload replaces extractInvokedSkillsFromHistory
  (works with raw TPayload before formatAgentMessages, not BaseMessage[])
- primeInvokedSkills now takes payload instead of messages, returns
  skillBodies Map instead of injectedMessages
- client.js calls primeInvokedSkills BEFORE formatAgentMessages, passes
  skillBodies through as the 4th param
- Removed invokedSkillMessages from createRun (no more systemContent hack)
- Single-pass: skill detection happens inside formatAgentMessages' existing
  tool_call processing loop, zero extra message iterations

* refactor: rename skillBodies to skills for consistency with SDK param

* refactor: move auth loading into primeInvokedSkills, pass loadAuthValues as dep

The payload/accessibleSkillIds guard and CODE_API_KEY loading now live
inside primeInvokedSkills (packages/api) rather than in the CJS caller.
initialize.js passes loadAuthValues as a dependency and the callback
is only created when skillsCapabilityEnabled.

* feat: ReadFile tool + conditional bash registration + skill path namespacing

ReadFile tool (read_file):
- General-purpose file reader, event-driven (ON_TOOL_EXECUTE)
- Schema: { file_path: string } — "{skillName}/{path}" convention
- handleReadFileCall: resolves skill name from path, ACL check, reads
  from DB cache or storage, binary detection, size limits (256KB),
  lazy caching (512KB), line numbers in output
- SKILL.md special case: reads skill.body directly
- Dispatched alongside SKILL_TOOL in createToolExecuteHandler
- Added to specialToolNames in ToolService

Conditional tool registration:
- ReadFile + SkillTool: always registered when skills enabled
- BashTool: only registered when codeEnvAvailable === true
- codeEnvAvailable passed through InitializeAgentParams from caller

Skill file path namespacing:
- primeSkillFiles now uploads as "{skillName}/SKILL.md" and
  "{skillName}/{relativePath}" instead of flat names
- Prevents file collisions when multiple skills are invoked

Wiring:
- getSkillFileByPath + updateSkillFileContent passed through
  ToolExecuteOptions in all three callers

* feat: return images/PDFs as artifacts from read_file, tighten caching

Binary artifact support:
- Images (png, jpeg, gif, webp) returned as base64 in artifact.content
  with type: 'image_url', processed by existing callback attachment flow
- PDFs returned as base64 artifact similarly
- Binary size limit: 10MB (MAX_BINARY_BYTES)
- Other binary files still return metadata + bash fallback

Caching:
- Text cached only on first read (file.content == null check)
- Binary flag cached only on first detection (file.isBinary == null)
- Skill files are immutable; no redundant cache writes

Registration:
- ReadFileToolDefinition now includes responseFormat: 'content_and_artifact'

* chore: update @librechat/agents to version 3.1.66-dev.0 and add peer dependencies in package-lock.json and package.json files

* fix: resolve review findings #1,#2,#4,#5,#6,#10,#13

Critical:
- #1: primeInvokedSkills now accumulates files across all skills into
  one session entry instead of overwriting. Parallel processing via
  Promise.allSettled.
- #2: codeEnvAvailable now computed and passed in openai.js and
  responses.js (was missing, bash tool never registered in those flows)

Major:
- #4: relativePath in updateSkillFileCodeEnvIds now strips the
  {skillName}/ prefix to match SkillFile documents. SKILL.md filter
  uses endsWith instead of exact match.
- #5: File priming guarded on apiKey being non-empty (skip when not
  configured instead of failing with auth error)
- #6: Skills processed in parallel via Promise.allSettled instead of
  sequential for-of loop

Minor:
- #10: Use top-level imports in initialize.js instead of inline requires
- #13: Log warning when skill catalog reaches the 100-skill limit

* fix: resolve followup review findings N1,N2,N4

N1 (CRITICAL): Wire skill deps into responses.js non-streaming path.
Was completely missing getSkillByName, file strategy functions, etc.

N2 (MAJOR): Single batch upload for ALL skills' files. Resolves skills
in parallel (Phase 1), then collects all file streams across skills
and does ONE batchUploadCodeEnvFiles call (Phase 2). All files share
one session_id, eliminating cross-session isolation issues.

N4 (MINOR): Move inline require() to top-level in openai.js and
responses.js, consistent with initialize.js.

* fix: add mocks for new file strategy imports in controller tests

* fix: restore session freshness check, parallelize file lookups, add warnings

R1: Re-add session freshness check before batch upload. Checks any
existing codeEnvIdentifier via getSessionInfo + checkIfActive. If the
session is still active (23h window), returns cached file references
with zero re-uploads.

R2: listSkillFiles calls parallelized via Promise.all (were sequential
in the for-of loop).

R3: Log warning when skill record lookup fails during identifier
persistence (was a silent empty-string fallback).

* fix: guard freshness cache on single-session consistency

* fix: multi-session freshness check (code env handles mixed sessions natively)

The code execution environment fetches each file by its own
{session_id, fileId} pair independently — no single-session
requirement. Removed the sessionIds.size === 1 guard.

Now checks ALL distinct sessions for freshness. If every session
is still active (23h window), returns cached references with per-file
session_ids preserved. If any session expired, falls through to
re-upload everything in a single batch.

* perf: parallelize session freshness checks via Promise.all

* fix: add optional chaining for session info retrieval in primeInvokedSkills

Updated the primeInvokedSkills function to use optional chaining for getSessionInfo and checkIfActive methods, ensuring safer access and preventing potential runtime errors when these methods are undefined.

* fix: address review findings #1-#9 + Codex P1/P2 + session probe

Critical:
- #1/Codex P1: Add codeApiKey loading to openai.js and responses.js
  loadTools configurable (was missing, file priming broken in 2/3 paths)
- Codex P1: Fix cached file name prefix in primeSkillFiles cache path
  (was sf.relativePath, now ${skill.name}/${sf.relativePath})

Major:
- Codex P2: Honor ephemeral skills toggle in agents endpoint
  (check ephemeralAgent?.skills !== false alongside admin capability)
- #4: Early size check using file.bytes from DB before streaming
  (prevents full-file buffer for oversized files)

Minor:
- #5: Replace Record<string, any> with Record<string, boolean | string>
- #6: Localize Pin/Unpin aria-labels with com_ui_pin/com_ui_unpin
- #8: Parallelize stream acquisition in primeSkillFiles via
  Promise.allSettled
- #9: Log warning for partial batch upload failures with filenames

Performance:
- Session probe optimization: getSessionInfo now hits per-object
  endpoint (GET /sessions/{sid}/objects/{fid}) instead of listing
  entire session (GET /files/{sid}?detail=summary). O(1) stat vs
  O(N) list + linear scan.

* refactor: extract shared skill wiring helper + add unit tests

DRY (#3):
- New skillDeps.js exports getSkillToolDeps() with all 9 skill-related
  deps (getSkillByName, listSkillFiles, getStrategyFunctions, etc.)
- Replaces 5 identical copy-paste blocks across initialize.js, openai.js,
  responses.js (streaming + non-streaming paths)
- One place to maintain when skill deps change

Tests (#2):
- 8 unit tests for extractInvokedSkillsFromPayload covering:
  string args, object args, missing skill tool_calls, non-assistant
  messages, malformed JSON, empty skillName, empty payload, dedup

* fix: remove @jest/globals import, use global jest env

* fix: resolve round 2 review findings R2-1 through R2-7

R2-1 (toggle semantics): openai.js + responses.js now check admin
  capability (AgentCapabilities.skills) alongside ephemeral toggle.
  Aligns with initialize.js.

R2-2 (swallowed error): primeInvokedSkills now logs
  updateSkillFileCodeEnvIds failures (was .catch(() => {}))

R2-4 (test cast): Record<string, string> → Record<string, unknown>

R2-5 (DRY regression): Extract enrichWithSkillConfigurable() into
  skillDeps.js. Replaces 4 identical loadAuthValues blocks.
  Each loadTools callback is now a one-liner. JSDoc added (R2-6).

R2-7 (sequential streams): primeInvokedSkills now uses
  Promise.allSettled for parallel stream acquisition.

* fix: require explicit skills toggle + treat partial cache as miss

- initialize.js: change ephemeralSkillsToggle !== false to === true
  (unset toggle no longer enables skills)
- primeSkillFiles cache: require ALL files to have codeEnvIdentifier
  before using cache (partial persistence = cache miss = re-upload)
- primeInvokedSkills cache: same check (allFilesWithIds.length must
  equal total file count)

* fix: pass entity_id=skillId on batch upload, eliminates per-user cache thrashing

primeSkillFiles now passes entity_id: skill._id.toString() to
batchUploadCodeEnvFiles. This scopes the code env session to the
skill, not the user. All users sharing a skill share the same
uploaded files — no more cache thrashing from overwriting each
other's codeEnvIdentifier.

The stored codeEnvIdentifier now includes ?entity_id= suffix so
freshness checks pass the entity_id through to the per-object
stat endpoint. Both primeSkillFiles and primeInvokedSkills
store consistent identifier formats.

* fix: pass entity_id on multi-skill batch upload, consistent identifier format

* Revert "fix: pass entity_id on multi-skill batch upload, consistent identifier format"

This reverts commit c85ce2161e.

* refactor: per-skill upload in primeInvokedSkills, eliminate multi-skill batch

Replace the monolithic multi-skill batch upload with per-skill
primeSkillFiles calls. Each skill gets its own session with
entity_id=skillId, ensuring:

- Correct session auth (entity_id matches on freshness checks)
- Per-skill freshness caching (only expired skills re-upload)
- Shared skill sessions work across users (same entity_id=skillId)
- Code env handles mixed session_ids natively

The big batch block (stream collection, single upload, identifier
mapping) is replaced by a simple loop over primeSkillFiles, which
already handles freshness caching, batch upload, and identifier
persistence per-skill.

* fix: resolve review findings #1,#3-5,#7,#9-11

Critical:
- #1: Strip ?entity_id= query string before splitting codeEnvIdentifier
  into session_id/fileId (was corrupting cached file IDs in 4 locations)

Major:
- #4: Parallelize per-skill primeSkillFiles via Promise.allSettled
- #5: Add logger.warn to all empty .catch(() => {}) on cache writes

Minor:
- #7: Add logger.debug to enrichWithSkillConfigurable catch block
- #9: Use error instanceof Error guard in batchUploadCodeEnvFiles
- #10: Move enrichWithSkillConfigurable to TypeScript in packages/api
  (skillConfigurable.ts), skillDeps.js wraps with loadAuthValues dep
- #11: Reduce MAX_BINARY_BYTES from 10MB to 5MB (~11.5MB peak with b64)

* fix: forward entity_id in session probe + always register bash tool

Codex P2 (entity_id in probe): getSessionInfo now preserves and
forwards query params (including entity_id) to the per-object stat
endpoint. Without this, identifiers stored as ...?entity_id=... would
fail auth checks because the entity_id scope was dropped.

Codex P2 (bash tool availability): Remove codeEnvAvailable gate from
injectSkillCatalog. Bash tool definition is now always registered when
skills are enabled. Actual tool instance creation still happens at
execution time in loadToolsForExecution (which loads per-user
credentials). This ensures users with per-user CODE_API_KEY get
bash without requiring a global env var at init time.

Removes codeEnvAvailable from InjectSkillCatalogParams,
InitializeAgentParams, and all three controller entry points.

* fix: add debug logging to primeInvokedSkills catch, rename export alias

* fix: stub bash tool when no key + remove PDF artifact path

Codex P1 (bash tool): When CODE_API_KEY is unavailable, create a stub
tool that returns "Code execution is not available. Use read_file
instead." This prevents "tool not found" errors from the model
repeatedly calling bash_tool in no-code-env deployments while still
registering the definition for per-user credential users.

Codex P2 (PDF artifacts): Remove PDF image_url artifact path. The
host artifact pipeline processes image_url via saveBase64Image which
fails for PDFs. PDFs now fall through to the generic binary handler
("Use bash to process"). TODO comment for future document artifact
support.

Also: isImageOrPdf → isImage in early size checks (PDFs are no
longer treated as artifact candidates).

* fix: remove dead PDF_MIME constant, hoist skillToolDeps, document session_id

- #7: Remove unused PDF_MIME constant (dead code after PDF artifact removal)
- #11: Hoist skillToolDeps to module-level constant (avoid per-call allocation)
- #6: Document that CodeSessionContext.session_id is a representative value;
  ToolNode uses per-file session_id from the files array

* fix: call toolEndCallback for skill/read_file artifacts + clear codeEnvIdentifier on re-upload

Codex P1 (toolEndCallback bypass): skill and read_file handler branches
returned early, bypassing the toolEndCallback that processes artifacts
(image attachments). Now calls toolEndCallback when the result has an
artifact, using the same metadata pattern as the normal tool.invoke path.

Codex P1 (stale identifiers): upsertSkillFile now $unset's
codeEnvIdentifier alongside content and isBinary when a file is
re-uploaded. Prevents the freshness cache from returning references
to old file content after a skill file is replaced.

* fix: add session_id comment at cached path, rename skillResult to handlerResult

* fix: return content_and_artifact from bash stub so result.content is populated

* fix: deterministic skill lookup, dedup warning, and multi-session freshness check

- getSkillByName: add sort({updatedAt:-1}) so name collisions resolve
  deterministically to the most recently updated skill
- injectSkillCatalog: warn when multiple accessible skills share a name
- primeSkillFiles: check ALL distinct sessions for freshness, not just
  the first file's session, preventing stale refs after partial bulkWrite

* refactor: update icon import in Skills component

- Replaced the Scroll icon with ScrollText in the Skills component for improved clarity and consistency in the UI.

* fix: SKILL.md cache parity, gate bash_tool on code env, fix read_file too-large message

- primeSkillFiles: filter SKILL.md from returned files array on fresh
  upload so cached and non-cached paths return identical file sets
  (SKILL.md is still on disk in the session for bash access)
- injectSkillCatalog: only register bash_tool when codeEnvAvailable is
  true; thread the flag from all three CJS callers via execute_code
  capability check
- handleReadFileCall: tell the model to invoke the skill first before
  suggesting /mnt/data paths for oversized files

* fix: use EnvVar constant, deduplicate auth lookup, validate batch upload, stream byte limit

- Replace hardcoded 'LIBRECHAT_CODE_API_KEY' with EnvVar.CODE_API_KEY
  in skillConfigurable.ts and skillFiles.ts
- Resolve code API key once at run start in initialize.js and pass to
  both primeInvokedSkills and enrichWithSkillConfigurable via optional
  preResolvedCodeApiKey param, eliminating redundant loadAuthValues calls
- Add response structure validation in batchUploadCodeEnvFiles before
  accessing session_id/files to surface unexpected responses early
- Add streaming byte counter in handleReadFileCall that aborts and
  destroys the stream when accumulated bytes exceed MAX_BINARY_BYTES,
  preventing full file buffering when DB metadata is inaccurate

* refactor: update icon import in ToolsDropdown component

- Replaced the Scroll icon with ScrollText in the ToolsDropdown component for improved clarity and consistency in the UI.

* fix: partial upload failure detection, EnvVar in initialize.js, declaration ordering

- primeSkillFiles: return null (failure) when batch upload partially
  succeeds — missing bundled files would cause runtime bash/read
  failures with missing paths in code env
- initialize.js: replace hardcoded 'LIBRECHAT_CODE_API_KEY' with
  EnvVar.CODE_API_KEY imported from @librechat/agents
- initialize.js: move enabledCapabilities, accessibleSkillIds, and
  codeApiKey declarations before the toolExecuteOptions closure that
  references them (eliminates reliance on temporal dead zone hoisting)
2026-04-25 04:02:00 -04:00
Danny Avila
39f5f83a8a
🔌 fix: Isolate Code-Server HTTP Agents to Prevent Socket Pool Contamination (#12311)
* 🔧 fix: Isolate HTTP agents for code-server axios requests

Prevents socket hang up after 5s on Node 19+ when code executor has
file attachments. follow-redirects (axios dep) leaks `socket.destroy`
as a timeout listener on TCP sockets; with Node 19+ defaulting to
keepAlive: true, tainted sockets re-enter the global pool and destroy
active node-fetch requests in CodeExecutor after the idle timeout.

Uses dedicated http/https agents with keepAlive: false for all axios
calls targeting CODE_BASEURL in crud.js and process.js.

Closes #12298

* ♻️ refactor: Extract code-server HTTP agents to shared module

- Move duplicated agent construction from crud.js and process.js into
  a shared agents.js module to eliminate DRY violation
- Switch process.js from raw `require('axios')` to `createAxiosInstance()`
  for proxy configuration parity with crud.js
- Fix import ordering in process.js (agent constants no longer split imports)
- Add 120s timeout to uploadCodeEnvFile (was the only code-server call
  without a timeout)

*  test: Add regression tests for code-server socket isolation

- Add crud.spec.js covering getCodeOutputDownloadStream and
  uploadCodeEnvFile (agent options, timeout, URL, error handling)
- Add socket pool isolation tests to process.spec.js asserting
  keepAlive:false agents are forwarded to axios
- Update process.spec.js mocks for createAxiosInstance() migration

* ♻️ refactor: Move code-server agents to packages/api

Relocate agents.js from api/server/services/Files/Code/ to
packages/api/src/utils/code.ts per workspace conventions. Consumers
now import codeServerHttpAgent/codeServerHttpsAgent from @librechat/api.
2026-03-19 16:16:57 -04:00
Danny Avila
9a210971f5
🛜 refactor: Streamline App Config Usage (#9234)
* WIP: app.locals refactoring

WIP: appConfig

fix: update memory configuration retrieval to use getAppConfig based on user role

fix: update comment for AppConfig interface to clarify purpose

🏷️ refactor: Update tests to use getAppConfig for endpoint configurations

ci: Update AppService tests to initialize app config instead of app.locals

ci: Integrate getAppConfig into remaining tests

refactor: Update multer storage destination to use promise-based getAppConfig and improve error handling in tests

refactor: Rename initializeAppConfig to setAppConfig and update related tests

ci: Mock getAppConfig in various tests to provide default configurations

refactor: Update convertMCPToolsToPlugins to use mcpManager for server configuration and adjust related tests

chore: rename `Config/getAppConfig` -> `Config/app`

fix: streamline OpenAI image tools configuration by removing direct appConfig dependency and using function parameters

chore: correct parameter documentation for imageOutputType in ToolService.js

refactor: remove `getCustomConfig` dependency in config route

refactor: update domain validation to use appConfig for allowed domains

refactor: use appConfig registration property

chore: remove app parameter from AppService invocation

refactor: update AppConfig interface to correct registration and turnstile configurations

refactor: remove getCustomConfig dependency and use getAppConfig in PluginController, multer, and MCP services

refactor: replace getCustomConfig with getAppConfig in STTService, TTSService, and related files

refactor: replace getCustomConfig with getAppConfig in Conversation and Message models, update tempChatRetention functions to use AppConfig type

refactor: update getAppConfig calls in Conversation and Message models to include user role for temporary chat expiration

ci: update related tests

refactor: update getAppConfig call in getCustomConfigSpeech to include user role

fix: update appConfig usage to access allowedDomains from actions instead of registration

refactor: enhance AppConfig to include fileStrategies and update related file strategy logic

refactor: update imports to use normalizeEndpointName from @librechat/api and remove redundant definitions

chore: remove deprecated unused RunManager

refactor: get balance config primarily from appConfig

refactor: remove customConfig dependency for appConfig and streamline loadConfigModels logic

refactor: remove getCustomConfig usage and use app config in file citations

refactor: consolidate endpoint loading logic into loadEndpoints function

refactor: update appConfig access to use endpoints structure across various services

refactor: implement custom endpoints configuration and streamline endpoint loading logic

refactor: update getAppConfig call to include user role parameter

refactor: streamline endpoint configuration and enhance appConfig usage across services

refactor: replace getMCPAuthMap with getUserMCPAuthMap and remove unused getCustomConfig file

refactor: add type annotation for loadedEndpoints in loadEndpoints function

refactor: move /services/Files/images/parse to TS API

chore: add missing FILE_CITATIONS permission to IRole interface

refactor: restructure toolkits to TS API

refactor: separate manifest logic into its own module

refactor: consolidate tool loading logic into a new tools module for startup logic

refactor: move interface config logic to TS API

refactor: migrate checkEmailConfig to TypeScript and update imports

refactor: add FunctionTool interface and availableTools to AppConfig

refactor: decouple caching and DB operations from AppService, make part of consolidated `getAppConfig`

WIP: fix tests

* fix: rebase conflicts

* refactor: remove app.locals references

* refactor: replace getBalanceConfig with getAppConfig in various strategies and middleware

* refactor: replace appConfig?.balance with getBalanceConfig in various controllers and clients

* test: add balance configuration to titleConvo method in AgentClient tests

* chore: remove unused `openai-chat-tokens` package

* chore: remove unused imports in initializeMCPs.js

* refactor: update balance configuration to use getAppConfig instead of getBalanceConfig

* refactor: integrate configMiddleware for centralized configuration handling

* refactor: optimize email domain validation by removing unnecessary async calls

* refactor: simplify multer storage configuration by removing async calls

* refactor: reorder imports for better readability in user.js

* refactor: replace getAppConfig calls with req.config for improved performance

* chore: replace getAppConfig calls with req.config in tests for centralized configuration handling

* chore: remove unused override config

* refactor: add configMiddleware to endpoint route and replace getAppConfig with req.config

* chore: remove customConfig parameter from TTSService constructor

* refactor: pass appConfig from request to processFileCitations for improved configuration handling

* refactor: remove configMiddleware from endpoint route and retrieve appConfig directly in getEndpointsConfig if not in `req.config`

* test: add mockAppConfig to processFileCitations tests for improved configuration handling

* fix: pass req.config to hasCustomUserVars and call without await after synchronous refactor

* fix: type safety in useExportConversation

* refactor: retrieve appConfig using getAppConfig in PluginController and remove configMiddleware from plugins route, to avoid always retrieving when plugins are cached

* chore: change `MongoUser` typedef to `IUser`

* fix: Add `user` and `config` fields to ServerRequest and update JSDoc type annotations from Express.Request to ServerRequest

* fix: remove unused setAppConfig mock from Server configuration tests
2025-08-26 12:10:18 -04:00
Danny Avila
5f2d1c5dc9
👁️ feat: Azure Mistral OCR Strategy (#7888)
* 👁️ feat: Add Azure Mistral OCR strategy and endpoint integration

This commit introduces a new OCR strategy named 'azure_mistral_ocr', allowing the use of a Mistral OCR endpoint deployed on Azure. The configuration, schemas, and file upload strategies have been updated to support this integration, enabling seamless OCR processing via Azure-hosted Mistral services.

* 🗑️ chore: Clean up .gitignore by removing commented-out uncommon directory name

* chore: remove unused vars

* refactor: Move createAxiosInstance to packages/api/utils and update imports

- Removed the createAxiosInstance function from the config module and relocated it to a new utils module for better organization.
- Updated import paths in relevant files to reflect the new location of createAxiosInstance.
- Added tests for createAxiosInstance to ensure proper functionality and proxy configuration handling.

* chore: move axios helpers to packages/api

- Added logAxiosError function to @librechat/api for centralized error logging.
- Updated imports across various files to use the new logAxiosError function.
- Removed the old axios.js utility file as it is no longer needed.

* chore: Update Jest moduleNameMapper for improved path resolution

- Added a new mapping for '~/' to resolve module paths in Jest configuration, enhancing import handling for the project.

* feat: Implement Mistral OCR API integration in TS

* chore: Update MistralOCR tests based on new imports

* fix: Enhance MistralOCR configuration handling and tests

- Introduced helper functions for resolving configuration values from environment variables or hardcoded settings.
- Updated the uploadMistralOCR and uploadAzureMistralOCR functions to utilize the new configuration resolution logic.
- Improved test cases to ensure correct behavior when mixing environment variables and hardcoded values.
- Mocked file upload and signed URL responses in tests to validate functionality without external dependencies.

* feat: Enhance MistralOCR functionality with improved configuration and error handling

- Introduced helper functions for loading authentication configuration and resolving values from environment variables.
- Updated uploadMistralOCR and uploadAzureMistralOCR functions to utilize the new configuration logic.
- Added utility functions for processing OCR results and creating error messages.
- Improved document type determination and result aggregation for better OCR processing.

* refactor: Reorganize OCR type imports in Mistral CRUD file

- Moved OCRResult, OCRResultPage, and OCRImage imports to a more logical grouping for better readability and maintainability.

* feat: Add file exports to API and create files index

* chore: Update OCR types for enhanced structure and clarity

- Redesigned OCRImage interface to include mandatory fields and improved naming conventions.
- Added PageDimensions interface for better representation of page metrics.
- Updated OCRResultPage to include dimensions and mandatory images array.
- Refined OCRResult to include document annotation and usage information.

* refactor: use TS counterpart of uploadOCR methods

* ci: Update MistralOCR tests to reflect new OCR result structure

* chore: Bump version of @librechat/api to 1.2.3 in package.json and package-lock.json

* chore: Update CONFIG_VERSION to 1.2.8

* chore: remove unused sendEvent function from config module (now imported from '@librechat/api')

* chore: remove MistralOCR service files and tests (now in '@librechat/api')

* ci: update logger import in ModelService tests to use @librechat/data-schemas

---------

Co-authored-by: arthurolivierfortin <arthurolivier.fortin@gmail.com>
2025-06-13 15:14:57 -04:00
Danny Avila
299cabd6ed
🔧 refactor: Consolidate Logging, Model Selection & Actions Optimizations, Minor Fixes (#6553)
* 🔧 feat: Enhance logging configuration for production and debug environments

* 🔒 feat: Implement encryption and decryption functions for sensitive values in ActionService with URL encoding/decoding

* refactor: optimize action service for agent tools

* refactor: optimize action processing for Assistants API

* fix: handle case where agent is not found in loadAgent function

* refactor: improve error handling in API calls by throwing new Error with logAxiosError output

* chore: bump @librechat/agents to 2.3.95, fixes "Invalid tool call structure: No preceding AIMessage with tool_call_ids"

* refactor: enhance error logging in logAxiosError function to include response status

* refactor: remove unused useModelSelection hook from Endpoint

* refactor: add support for assistants in useSelectorEffects hook

* refactor: replace string easing with imported easings in Landing component

* chore: remove duplicate translation

* refactor: update model selection logic and improve localization for UI elements

* refactor: replace endpoint value checks with helper functions for agents and assistants

* refactor: optimize display value logic and utilize useMemo for performance improvements

* refactor: clean up imports and optimize display/icon value logic in endpoint components, fix spec selection

* refactor: enhance error logging in axios utility to include stack traces for better debugging

* refactor: update logging configuration to use DEBUG_LOGGING and streamline log level handling

* refactor: adjust className for export menu button to improve layout consistency and remove unused title prop from ShareButton

* refactor: update import path for logAxiosError utility to improve module organization and clarity

* refactor: implement debounced search value setter in ModelSelectorContext for improved performance
2025-03-26 14:10:52 -04:00
Danny Avila
cf03731cc8
🔧 fix: Axios Proxy Usage And Bump mongoose (#6298)
* fix: bump mongoose to fix nested schema errors

* fix: Enhance Axios instance creation with improved proxy handling and error logging

* fix: Refactor Axios instance creation and remove proxy handling from file upload functions

* fix: Update proxy configuration in Axios instance creation and add unit tests
2025-03-11 14:44:54 -04:00
Danny Avila
8cb7f34f86
🚀 feat: Add Code API Proxy Support and Update MCP SDK (#6203)
* chore: bump mcp sdk

* feat: Add proxy support for file download and upload in Code Environment CRUD operations

* chore: remove unused files

* chore: change output format from CommonJS to ES module in server rollup config
2025-03-06 12:47:59 -05:00
Danny Avila
964a74c73b
🛠 refactor: Ensure File Deletions, File Naming, and Agent Resource Updates (#5928)
* refactor: Improve error logging for file upload and processing functions to prevent verbosity

* refactor: Add uploads directory to Docker Compose to persist file uploads

* refactor: `addAgentResourceFile` to handle edge case of non-existing `tool_resource` array

* refactor: Remove version specification from deploy-compose.yml

* refactor: Prefix filenames with file_id to ensure uniqueness in file uploads

* refactor: Enhance error handling in deleteVectors to log warnings for non-404 errors

* refactor: Limit file search results to top 5 based on relevance score

* 🌍 i18n: Update translation.json with latest translations

---------

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
2025-02-17 19:37:03 -05:00
Danny Avila
bf0a84e45a
®️ feat: Support Rscript for Code Interpreter & recursionLimit for Agents (#5170)
* chore: bump @librechat/agents to v1.9.8 for rscript support

* chore: fix @langchain/google-genai dep., match agents

* chore: fix @langchain/google-vertexai to v0.1.5, match with agents

* chore: bump @librechat/agents to v1.9.9

* chore: update @librechat/agents to v1.9.91 and @langchain/google-vertexai to v0.1.6

* chore: increase MAX_FILE_SIZE to 150MB for file uploads

* chore: bump @librechat/agents to v1.9.92

* feat: support `recursionLimit` for agents

* chore: update configuration version to 1.2.1 in librechat.yaml and config.ts

* feat: add R language SVG icon to the assets and include it in ApiKeyDialog

* feat: add support for new vision model 'o1' and exclude 'o1-mini'
2025-01-03 16:50:00 -05:00
Danny Avila
1a815f5e19
🎉 feat: Code Interpreter API and Agents Release (#4860)
* feat: Code Interpreter API & File Search Agent Uploads

chore: add back code files

wip: first pass, abstract key dialog

refactor: influence checkbox on key changes

refactor: update localization keys for 'execute code' to 'run code'

wip: run code button

refactor: add throwError parameter to loadAuthValues and getUserPluginAuthValue functions

feat: first pass, API tool calling

fix: handle missing toolId in callTool function and return 404 for non-existent tools

feat: show code outputs

fix: improve error handling in callTool function and log errors

fix: handle potential null value for filepath in attachment destructuring

fix: normalize language before rendering and prevent null return

fix: add loading indicator in RunCode component while executing code

feat: add support for conditional code execution in Markdown components

feat: attachments

refactor: remove bash

fix: pass abort signal to graph/run

refactor: debounce and rate limit tool call

refactor: increase debounce delay for execute function

feat: set code output attachments

feat: image attachments

refactor: apply message context

refactor: pass `partIndex`

feat: toolCall schema/model/methods

feat: block indexing

feat: get tool calls

chore: imports

chore: typing

chore: condense type imports

feat: get tool calls

fix: block indexing

chore: typing

refactor: update tool calls mapping to support multiple results

fix: add unique key to nav link for rendering

wip: first pass, tool call results

refactor: update query cache from successful tool call mutation

style: improve result switcher styling

chore: note on using \`.toObject()\`

feat: add agent_id field to conversation schema

chore: typing

refactor: rename agentMap to agentsMap for consistency

feat: Agent Name as chat input placeholder

chore: bump agents

📦 chore: update @langchain dependencies to latest versions to match agents package

📦 chore: update @librechat/agents dependency to version 1.8.0

fix: Aborting agent stream removes sender; fix(bedrock): completion removes preset name label

refactor: remove direct file parameter to use req.file, add `processAgentFileUpload` for image uploads

feat: upload menu

feat: prime message_file resources

feat: implement conversation access validation in chat route

refactor: remove file parameter from processFileUpload and use req.file instead

feat: add savedMessageIds set to track saved message IDs in BaseClient, to prevent unnecessary double-write to db

feat: prevent duplicate message saves by checking savedMessageIds in AgentController

refactor: skip legacy RAG API handling for agents

feat: add files field to convoSchema

refactor: update request type annotations from Express.Request to ServerRequest in file processing functions

feat: track conversation files

fix: resendFiles, addPreviousAttachments handling

feat: add ID validation for session_id and file_id in download route

feat: entity_id for code file uploads/downloads

fix: code file edge cases

feat: delete related tool calls

feat: add stream rate handling for LLM configuration

feat: enhance system content with attached file information

fix: improve error logging in resource priming function

* WIP: PoC, sequential agents

WIP: PoC Sequential Agents, first pass content data + bump agents package

fix: package-lock

WIP: PoC, o1 support, refactor bufferString

feat: convertJsonSchemaToZod

fix: form issues and schema defining erroneous model

fix: max length issue on agent form instructions, limit conversation messages to sequential agents

feat: add abort signal support to createRun function and AgentClient

feat: PoC, hide prior sequential agent steps

fix: update parameter naming from config to metadata in event handlers for clarity, add model to usage data

refactor: use only last contentData, track model for usage data

chore: bump agents package

fix: content parts issue

refactor: filter contentParts to include tool calls and relevant indices

feat: show function calls

refactor: filter context messages to exclude tool calls when no tools are available to the agent

fix: ensure tool call content is not undefined in formatMessages

feat: add agent_id field to conversationPreset schema

feat: hide sequential agents

feat: increase upload toast duration to 10 seconds

* refactor: tool context handling & update Code API Key Dialog

feat: toolContextMap

chore: skipSpecs -> useSpecs

ci: fix handleTools tests

feat: API Key Dialog

* feat: Agent Permissions Admin Controls

feat: replace label with button for prompt permission toggle

feat: update agent permissions

feat: enable experimental agents and streamline capability configuration

feat: implement access control for agents and enhance endpoint menu items

feat: add welcome message for agent selection in localization

feat: add agents permission to access control and update version to 0.7.57

* fix: update types in useAssistantListMap and useMentions hooks for better null handling

* feat: mention agents

* fix: agent tool resource race conditions when deleting agent tool resource files

* feat: add error handling for code execution with user feedback

* refactor: rename AdminControls to AdminSettings for clarity

* style: add gap to button in AdminSettings for improved layout

* refactor: separate agent query hooks and check access to enable fetching

* fix: remove unused provider from agent initialization options, creates issue with custom endpoints

* refactor: remove redundant/deprecated modelOptions from AgentClient processes

* chore: update @librechat/agents to version 1.8.5 in package.json and package-lock.json

* fix: minor styling issues + agent panel uniformity

* fix: agent edge cases when set endpoint is no longer defined

* refactor: remove unused cleanup function call from AppService

* fix: update link in ApiKeyDialog to point to pricing page

* fix: improve type handling and layout calculations in SidePanel component

* fix: add missing localization string for agent selection in SidePanel

* chore: form styling and localizations for upload filesearch/code interpreter

* fix: model selection placeholder logic in AgentConfig component

* style: agent capabilities

* fix: add localization for provider selection and improve dropdown styling in ModelPanel

* refactor: use gpt-4o-mini > gpt-3.5-turbo

* fix: agents configuration for loadDefaultInterface and update related tests

* feat: DALLE Agents support
2024-12-04 15:48:13 -05:00
Danny Avila
95011ce349
🚧 WIP: Merge Dev Build (#4611)
* refactor: Agent CodeFiles, abortUpload WIP

* feat: code environment file upload

* refactor: useLazyEffect

* refactor:
- Add `watch` from `useFormContext` to check if code execution is enabled
- Disable file upload button if `agent_id` is not selected or code execution is disabled

* WIP: primeCodeFiles; refactor: rename sessionId to session_id for uniformity

* Refactor: Rename session_id to sessionId for uniformity in AuthService.js

* chore: bump @librechat/agents to version 1.7.1

* WIP: prime code files

* refactor: Update code env file upload method to use read stream

* feat: reupload code env file if no longer active

* refactor: isAssistantTool -> isEntityTool + address type issues

* feat: execute code tool hook

* refactor: Rename isPluginAuthenticated to checkPluginAuth in PluginController.js

* refactor: Update PluginController.js to use AuthType constant for comparison

* feat: verify tool authentication (execute_code)

* feat: enter librechat_code_api_key

* refactor: Remove unused imports in BookmarkForm.tsx

* feat: authenticate code tool

* refactor: Update Action.tsx to conditionally render the key and revoke key buttons

* refactor(Code/Action): prevent uncheck-able 'Run Code' capability when key is revoked

* refactor(Code/Action): Update Action.tsx to conditionally render the key and revoke key buttons

* fix: agent file upload edge cases

* chore: bump @librechat/agents

* fix: custom endpoint providerValue icon

* feat: ollama meta modal token values + context

* feat: ollama agents

* refactor: Update token models for Ollama models

* chore: Comment out CodeForm

* refactor: Update token models for Ollama and Meta models
2024-11-01 18:36:39 -04:00
Danny Avila
ad74350036
🚧 chore: merge latest dev build (#4288)
* fix: agent initialization, add `collectedUsage` handling

* style: improve side panel styling

* refactor(loadAgent): Optimize order agent project ID retrieval

* feat: code execution

* fix: typing issues

* feat: ExecuteCode content part

* refactor: use local state for default collapsed state of analysis content parts

* fix: code parsing in ExecuteCode component

* chore: bump agents package, export loadAuthValues

* refactor: Update handleTools.js to use EnvVar for code execution tool authentication

* WIP

* feat: download code outputs

* fix(useEventHandlers): type issues

* feat: backend handling for code outputs

* Refactor: Remove console.log statement in Part.tsx

* refactor: add attachments to TMessage/messageSchema

* WIP: prelim handling for code outputs

* feat: attachments rendering

* refactor: improve attachments rendering

* fix: attachments, nullish edge case, handle attachments from event stream, bump agents package

* fix filename download

* fix: tool assignment for 'run code' on agent creation

* fix: image handling by adding attachments

* refactor: prevent agent creation without provider/model

* refactor: remove unnecessary space in agent creation success message

* refactor: select first model if selecting provider from empty on form

* fix: Agent avatar bug

* fix: `defaultAgentFormValues` causing boolean typing issue and typeerror

* fix: capabilities counting as tools, causing duplication of them

* fix: formatted messages edge case where consecutive content text type parts with the latter having tool_call_ids would cause consecutive AI messages to be created. furthermore, content could not be an array for tool_use messages (anthropic limitation)

* chore: bump @librechat/agents dependency to version 1.6.9

* feat: bedrock agents

* feat: new Agents icon

* feat: agent titling

* feat: agent landing

* refactor: allow sharing agent globally only if user is admin or author

* feat: initial AgentPanelSkeleton

* feat: AgentPanelSkeleton

* feat: collaborative agents

* chore: add potential authorName as part of schema

* chore: Remove unnecessary console.log statement

* WIP: agent model parameters

* chore: ToolsDialog typing and tool related localization chnages

* refactor: update tool instance type (latest langchain class), and rename google tool to 'google' proper

* chore: add back tools

* feat: Agent knowledge files upload

* refactor: better verbiage for disabled knowledge

* chore: debug logs for file deletions

* chore: debug logs for file deletions

* feat: upload/delete agent knowledge/file-search files

* feat: file search UI for agents

* feat: first pass, file search tool

* chore: update default agent capabilities and info
2024-09-30 17:17:57 -04:00