diff --git a/api/server/services/MCP.js b/api/server/services/MCP.js
index 1e8820b487..444a353951 100644
--- a/api/server/services/MCP.js
+++ b/api/server/services/MCP.js
@@ -1308,10 +1308,19 @@ function createToolInstance({
       }
       return result;
     } catch (error) {
-      logger.error(
-        `[MCP][${serverName}][${toolName}][User: ${userId}] Error calling MCP tool:`,
-        error,
-      );
+      /** A user Stop aborts every in-flight call at once. The rejection that
+       *  follows is the cancellation working, so it must not reach error-level
+       *  operational alerts; the wrapping below still reports it to the turn. */
+      if (config?.signal?.aborted === true) {
+        logger.debug(
+          `[MCP][${serverName}][${toolName}][User: ${userId}] Tool call cancelled by user abort`,
+        );
+      } else {
+        logger.error(
+          `[MCP][${serverName}][${toolName}][User: ${userId}] Error calling MCP tool:`,
+          error,
+        );
+      }
 
       /** Carries the actionable re-auth message; the substring heuristic below would misreport it as an OAuth configuration problem */
       if (error instanceof OpenIDReauthRequiredError) {
diff --git a/api/server/services/MCP.spec.js b/api/server/services/MCP.spec.js
index 86a0681c28..090088b39b 100644
--- a/api/server/services/MCP.spec.js
+++ b/api/server/services/MCP.spec.js
@@ -1610,6 +1610,76 @@ describe('User parameter passing tests', () => {
       expect(callTool).toHaveBeenCalledTimes(2);
     });
 
+    it('logs a user-aborted tool call as debug, not as an MCP error', async () => {
+      const mockUser = { id: 'cancel-user', role: 'USER' };
+      const mockRes = { write: jest.fn(), flush: jest.fn() };
+      const abortController = new AbortController();
+      const { getRoleByName } = require('~/models');
+      getRoleByName.mockResolvedValue({
+        permissions: {
+          [PermissionTypes.MCP_SERVERS]: {
+            [Permissions.USE]: true,
+          },
+        },
+      });
+      mockGetMCPManager.mockReturnValue({
+        callTool: jest.fn(
+          ({ options }) =>
+            new Promise((_resolve, reject) => {
+              const signal = options?.signal;
+              signal?.addEventListener(
+                'abort',
+                () => reject(new Error('This operation was aborted')),
+                {
+                  once: true,
+                },
+              );
+            }),
+        ),
+      });
+
+      const mcpTool = await createMCPTool({
+        res: mockRes,
+        user: mockUser,
+        config: { url: 'https://cancel.example.com/mcp' },
+        toolKey: `test-tool${D}test-server`,
+        provider: 'openai',
+        userMCPAuthMap: {},
+        availableTools: {
+          [`test-tool${D}test-server`]: {
+            function: {
+              description: 'Cached tool',
+              parameters: { type: 'object', properties: {} },
+            },
+          },
+        },
+      });
+
+      const call = mcpTool.invoke(
+        {},
+        {
+          signal: abortController.signal,
+          configurable: { user: mockUser },
+          metadata: { provider: 'openai', thread_id: 'thread-1', run_id: 'run-1' },
+          toolCall: {},
+        },
+      );
+      await new Promise((resolve) => setImmediate(resolve));
+      abortController.abort();
+      await expect(call).rejects.toThrow();
+      /** The wrapper rejects on abort while `_call` is still unwinding; let its
+       *  catch run before asserting on what it logged. */
+      await new Promise((resolve) => setImmediate(resolve));
+
+      expect(logger.error).not.toHaveBeenCalledWith(
+        expect.stringContaining('Error calling MCP tool'),
+        expect.anything(),
+      );
+      expect(logger.debug).toHaveBeenCalledWith(
+        expect.stringContaining('Tool call cancelled by user abort'),
+      );
+    });
+
     it.each(['OAuth flow initiated - return early', 'Pending OAuth flow reused - return early'])(
       'preserves runtime-detected OAuth for the internal signal: %s',
       async (oauthSignal) => {
diff --git a/packages/api/src/agents/handlers.spec.ts b/packages/api/src/agents/handlers.spec.ts
index fbdcf02fcd..306dfacf7c 100644
--- a/packages/api/src/agents/handlers.spec.ts
+++ b/packages/api/src/agents/handlers.spec.ts
@@ -384,6 +384,48 @@ describe('createToolExecuteHandler', () => {
         ),
       ).toHaveLength(0);
     });
+
+    /**
+     * An aborted run means the turn is over, not that this particular rejection
+     * was the cancellation — an unrelated failure can always race the Stop. The
+     * quiet-log branch must therefore never become a way around output filtering.
+     */
+    it('still filters a tool failure that rejects after the run was aborted', async () => {
+      const protectedValue = 'PROTECTED-CANCELLED-TOOL-OUTPUT';
+      const controller = new AbortController();
+      const tool = {
+        name: 'slow_tool',
+        invoke: jest.fn(
+          (_args: unknown, config: Record<string, unknown>) =>
+            new Promise((_resolve, reject) => {
+              const signal = config.signal as AbortSignal;
+              signal.addEventListener('abort', () => reject(new Error(protectedValue)), {
+                once: true,
+              });
+            }),
+        ),
+      };
+      const loadTools: ToolExecuteOptions['loadTools'] = jest.fn(async () => ({
+        loadedTools: [tool] as never[],
+      }));
+      const handler = createToolExecuteHandler({ loadTools });
+
+      const [result] = await new Promise<ToolExecuteResult[]>((resolve, reject) => {
+        const request: ToolExecuteBatchRequest = {
+          toolCalls: [{ id: 'call-1', name: 'slow_tool', args: {} }] as ToolCallRequest[],
+          configurable: { req: protectedToolOutputRequest() },
+          signal: controller.signal,
+          resolve,
+          reject,
+        };
+        handler.handle('on_tool_execute', request);
+        setTimeout(() => controller.abort(new Error('Operation aborted by user')), 10);
+      });
+
+      expect(result.status).toBe('error');
+      expect(result.errorMessage).toContain('content_filter_block');
+      expect(result.errorMessage).not.toContain(protectedValue);
+    });
   });
 
   describe('tool argument normalization', () => {
diff --git a/packages/api/src/agents/handlers.ts b/packages/api/src/agents/handlers.ts
index 958f887a90..e4be216182 100644
--- a/packages/api/src/agents/handlers.ts
+++ b/packages/api/src/agents/handlers.ts
@@ -5997,26 +5997,33 @@ export function createToolExecuteHandler(options: ToolExecuteOptions): EventHand
                     }
                     const { message, logContext } = getSafeToolError(toolError);
                     /** A user Stop rejects every in-flight call at once. That is
-                     *  the abort working, not a fault, so it stays out of the
-                     *  error log; the message still reaches the model turn. */
-                    if (runSignal?.aborted === true) {
-                      logger.debug(`[ON_TOOL_EXECUTE] Tool ${tc.name} cancelled by run abort`, {
-                        name: logContext.name,
-                      });
-                      return errorResult(tc, message);
-                    }
+                     *  the abort working, not a fault, so it is logged at debug.
+                     *  It only ever changes the log level: an aborted run says
+                     *  the turn is over, not that this particular rejection was
+                     *  the cancellation, so an unrelated failure racing the Stop
+                     *  must still take the same filtering and result path. */
+                    const logToolFailure = (context: Record<string, unknown>): void => {
+                      if (runSignal?.aborted === true) {
+                        logger.debug(
+                          `[ON_TOOL_EXECUTE] Tool ${tc.name} cancelled by run abort`,
+                          context,
+                        );
+                        return;
+                      }
+                      logger.error(`[ON_TOOL_EXECUTE] Tool ${tc.name} error`, context);
+                    };
                     const req = mergedConfigurable?.req as ServerRequest | undefined;
                     const filteredError = filteredToolOutputResult(tc, req, {
                       errorMessage: message,
                     });
                     if (filteredError != null) {
-                      logger.error(`[ON_TOOL_EXECUTE] Tool ${tc.name} error`, {
+                      logToolFailure({
                         name: logContext.name,
                         contentFiltered: true,
                       });
                       return filteredError;
                     }
-                    logger.error(`[ON_TOOL_EXECUTE] Tool ${tc.name} error`, {
+                    logToolFailure({
                       ...logContext,
                       toolCallArgsShape: getValueShape(tc.args),
                       toolInputSchemaKind: getToolInputSchemaKind(tool),