diff --git a/api/server/controllers/agents/client.js b/api/server/controllers/agents/client.js
index b57ce10a08..4c031ea3d5 100644
--- a/api/server/controllers/agents/client.js
+++ b/api/server/controllers/agents/client.js
@@ -838,20 +838,10 @@ class AgentClient extends BaseClient {
         ...(this.agentConfigs ? this.agentConfigs.values() : []),
       ];
       for (const a of agentsToSeed) {
-        logger.debug('[AgentClient] seed pass for agent', {
-          agentId: a?.id,
-          primedCodeFilesCount: a?.primedCodeFiles?.length ?? 0,
-          hasPrimedCodeFilesField: 'primedCodeFiles' in (a ?? {}),
-          codeEnvAvailable: a?.codeEnvAvailable,
-        });
         if (a?.primedCodeFiles?.length) {
           initialSessions = seedCodeFilesIntoSessions(a.primedCodeFiles, initialSessions);
         }
       }
-      logger.debug('[AgentClient] final initialSessions for createRun', {
-        hasMap: !!initialSessions,
-        executeCodeEntryFiles: initialSessions?.get?.('execute_code')?.files?.length ?? 0,
-      });
 
       let {
         messages: initialMessages,
diff --git a/api/server/services/ToolService.js b/api/server/services/ToolService.js
index 08393433b9..771c503657 100644
--- a/api/server/services/ToolService.js
+++ b/api/server/services/ToolService.js
@@ -795,13 +795,6 @@ async function loadToolDefinitionsWrapper({ req, res, agent, streamId = null, to
    * sandbox can't see the prior turn's generated artifacts on first read.
    */
   let primedCodeFiles;
-  logger.debug('[loadToolDefinitionsWrapper] code-files prime check', {
-    agentId: agent.id,
-    hasExecuteCode,
-    toolResourceKeys: Object.keys(tool_resources ?? {}),
-    codeFileIdCount: tool_resources?.[EToolResources.execute_code]?.file_ids?.length ?? 0,
-    codeFileObjCount: tool_resources?.[EToolResources.execute_code]?.files?.length ?? 0,
-  });
   if (hasExecuteCode && tool_resources) {
     try {
       const { toolContext, files } = await primeCodeFiles({
@@ -815,13 +808,6 @@ async function loadToolDefinitionsWrapper({ req, res, agent, streamId = null, to
       if (files?.length) {
         primedCodeFiles = files;
       }
-      logger.debug('[loadToolDefinitionsWrapper] primeCodeFiles result', {
-        agentId: agent.id,
-        primedCount: files?.length ?? 0,
-        sample: (files ?? [])
-          .slice(0, 3)
-          .map((f) => ({ id: f.id, session_id: f.session_id, name: f.name })),
-      });
     } catch (error) {
       logger.error('[loadToolDefinitionsWrapper] Error priming code files:', error);
     }
diff --git a/packages/api/src/agents/initialize.ts b/packages/api/src/agents/initialize.ts
index 0ac5056e9f..db69151b95 100644
--- a/packages/api/src/agents/initialize.ts
+++ b/packages/api/src/agents/initialize.ts
@@ -399,10 +399,10 @@ export async function initializeAgent(
     let codeGeneratedFiles: IMongoFile[] = [];
     let userCodeFiles: IMongoFile[] = [];
 
-    let threadMessageIds: string[] | undefined;
-    let threadFileIds: string[] | undefined;
-
     if (toolResourceSet.has(EToolResources.execute_code)) {
+      let threadMessageIds: string[] | undefined;
+      let threadFileIds: string[] | undefined;
+
       if (parentMessageId && parentMessageId !== Constants.NO_PARENT && db.getMessages) {
         /** Only select fields needed for thread traversal */
         const messages = await db.getMessages(
@@ -431,74 +431,12 @@ export async function initializeAgent(
       }
     }
 
-    logger.debug('[initializeAgent] code-files lookup', {
-      agentId: agent.id,
-      conversationId,
-      parentMessageId,
-      resendFiles,
-      agentToolStrings: (agent.tools ?? []).filter((t): t is string => typeof t === 'string'),
-      toolResourceSetHasExecCode: toolResourceSet.has(EToolResources.execute_code),
-      convoFileIdCount: fileIds.length,
-      toolFileCount: toolFiles.length,
-      threadMsgCount: threadMessageIds?.length ?? 0,
-      threadFileIdCount: threadFileIds?.length ?? 0,
-      threadMessageIdsSample: (threadMessageIds ?? []).slice(0, 5),
-      codeGeneratedFileCount: codeGeneratedFiles.length,
-      userCodeFileCount: userCodeFiles.length,
-    });
-
-    /**
-     * Sanity probe: when the thread covers a parent message and yet
-     * `getCodeGeneratedFiles` returned 0, run a relaxed lookup for the
-     * same conversation+context and report what's actually in the DB —
-     * this isolates whether the messageId filter is the culprit vs. the
-     * file simply not existing under this conversation/context.
-     */
-    if (
-      toolResourceSet.has(EToolResources.execute_code) &&
-      codeGeneratedFiles.length === 0 &&
-      (threadMessageIds?.length ?? 0) > 0 &&
-      db.getFiles
-    ) {
-      try {
-        const probeFiles = (await db.getFiles(
-          { conversationId, context: 'execute_code' },
-          {},
-          { messageId: 1, file_id: 1, filename: 1, 'metadata.fileIdentifier': 1, _id: 0 },
-        )) as Array<{
-          messageId?: string;
-          file_id?: string;
-          filename?: string;
-          metadata?: { fileIdentifier?: string };
-        }>;
-        logger.debug('[initializeAgent] code-files probe (no messageId filter)', {
-          agentId: agent.id,
-          probeCount: probeFiles.length,
-          sample: probeFiles.slice(0, 5).map((f) => ({
-            messageId: f.messageId,
-            file_id: f.file_id,
-            filename: f.filename,
-            hasFileIdentifier: !!f.metadata?.fileIdentifier,
-          })),
-        });
-      } catch (probeError) {
-        logger.warn('[initializeAgent] code-files probe failed', probeError);
-      }
-    }
-
     const allToolFiles = toolFiles.concat(codeGeneratedFiles, userCodeFiles);
     if (requestFiles.length || allToolFiles.length) {
       currentFiles = (await db.updateFilesUsage(requestFiles.concat(allToolFiles))) as IMongoFile[];
     }
   } else if (requestFiles.length) {
     currentFiles = (await db.updateFilesUsage(requestFiles)) as IMongoFile[];
-  } else {
-    logger.debug('[initializeAgent] code-files lookup skipped', {
-      agentId: agent.id,
-      hasConversationId: conversationId != null,
-      resendFiles,
-      requestFileCount: requestFiles.length,
-    });
   }
 
   if (currentFiles && currentFiles.length) {